PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g02030.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 282aa    MW: 32587.9 Da    PI: 8.9313
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g02030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM123.71.6e-38211322128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                      pGfrFhPtdeelv +yL++kve+k+l++ e ik++diyk++PwdLp                ++ky+++ r+nr+t sg+Wkatg dk++++  
  Vang01g02030.1  21 LPGFRFHPTDEELVGFYLRRKVEKKPLRI-ELIKQIDIYKYDPWDLP----------------RRKYRNSIRPNRVTGSGFWKATGIDKPIYCVk 98 
                     69***************************.89**************9................578999***********************974 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +e +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Vang01g02030.1  99 ePHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 132
                     45566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.14E-4519160IPR003441NAC domain
PROSITE profilePS5100543.14620161IPR003441NAC domain
PfamPF023652.2E-2122132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDVSKLHNSD EEDKKEDEVV LPGFRFHPTD EELVGFYLRR KVEKKPLRIE LIKQIDIYKY  60
DPWDLPRRKY RNSIRPNRVT GSGFWKATGI DKPIYCVKEP HECIGLKKSL VYYRGSAGKG  120
TKTDWMMHEF RLPPNGKSTT NPQPNDIQEA EVWTLCRIFK RVPSYKRYTP NLKDSNTAPI  180
TKPNPTNSSS SKTCSLESDT AKPCLTFTNS PSSLLLHQNQ MIKPVFGHVD QQPTTSFSYS  240
SFWNHQNLEL AHENWDDLTS VVQFAVDPSR LSDHCKEFNR F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-382216719171NO APICAL MERISTEM PROTEIN
1ut4_B4e-382216719171NO APICAL MERISTEM PROTEIN
1ut7_A4e-382216719171NO APICAL MERISTEM PROTEIN
1ut7_B4e-382216719171NO APICAL MERISTEM PROTEIN
3swm_A5e-382216722174NAC domain-containing protein 19
3swm_B5e-382216722174NAC domain-containing protein 19
3swm_C5e-382216722174NAC domain-containing protein 19
3swm_D5e-382216722174NAC domain-containing protein 19
3swp_A5e-382216722174NAC domain-containing protein 19
3swp_B5e-382216722174NAC domain-containing protein 19
3swp_C5e-382216722174NAC domain-containing protein 19
3swp_D5e-382216722174NAC domain-containing protein 19
4dul_A4e-382216719171NAC domain-containing protein 19
4dul_B4e-382216719171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00353DAPTransfer from AT3G12910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g02030.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429800.10.0PREDICTED: transcription factor JUNGBRUNNEN 1
SwissprotQ9SK552e-76NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A0S3RJV80.0A0A0S3RJV8_PHAAN; Uncharacterized protein
STRINGXP_007141427.11e-170(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.19e-78NAC family protein
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]