PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g01970.2
Common NameLR48_Vigan07g029800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 463aa    MW: 50832.4 Da    PI: 6.5125
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g01970.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH543e-17360406455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L++l+P++      K +Ka++Le+A+eY+ksLq
  Vang01g01970.2 360 VHNLSERRRRDRINDKMRALQQLIPNS-----NKTDKASMLEEAIEYLKSLQ 406
                     6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.09E-17351410No hitNo description
SuperFamilySSF474591.02E-19353421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.425356405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-18360414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-14360406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-18362411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MASINLFEAK SSLSLVQVVG TMKNTIPGWD FESDTCLTNQ RKPTGLDHEL VELLWQNGQV  60
VMHSQTNRKL PGNSSNLRQL QKTTQLNNLD QEEAAPWIQY PLDDPLEQEF CSNLLSELPP  120
PCEVESYYKP IRELEEEKFA NIFSPGAPHH PPSPSQPLPS IMKSSCAQGL QENLMSAPGF  180
HVPDSSQKIN DFGASRKVLN FPHFSAPRNV SSPSQKTAVN LSQSEAREHS VITVGSSHCG  240
SNHIPQDQDV NRVSSSGVWA TTNNATLSAE PEAIDCIHRR FPRSERGKSE IIEPTVASSS  300
GGSGSTGIGR TCSQSTREHD QKRKGTEQEA LEEQSEATEL KSADGNKLSQ RSRRSRAAEV  360
HNLSERRRRD RINDKMRALQ QLIPNSNKTD KASMLEEAIE YLKSLQFQLQ PMNALRYGSQ  420
AMQHSETMIA GSNNSSGPMS GTANVANVDD AISGKTGSST FH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1364369ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g01970.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429414.10.0PREDICTED: transcription factor PIF4
RefseqXP_017429416.10.0PREDICTED: transcription factor PIF4
TrEMBLA0A0L9UVN20.0A0A0L9UVN2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RJL00.0A0A0S3RJL0_PHAAN; Uncharacterized protein
STRINGXP_007141451.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.45e-24phytochrome interacting factor 3-like 6
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]