PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g01970.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 476aa    MW: 52302.2 Da    PI: 6.5103
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g01970.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH543.1e-17373419455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L++l+P++      K +Ka++Le+A+eY+ksLq
  Vang01g01970.1 373 VHNLSERRRRDRINDKMRALQQLIPNS-----NKTDKASMLEEAIEYLKSLQ 419
                     6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.44E-17364423No hitNo description
SuperFamilySSF474591.09E-19366433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.425369418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-18373427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-14373419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-18375424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MASINLFEAK SSLSLVQVVG TMKNTIPGWD FESDTCLTNQ RKPTGCVTYL CQTMILSLLD  60
HELVELLWQN GQVVMHSQTN RKLPGNSSNL RQLQKTTQLN NLDQEEAAPW IQYPLDDPLE  120
QEFCSNLLSE LPPPCEVESY YKPIRELEEE KFANIFSPGA PHHPPSPSQP LPSIMKSSCA  180
QGLQENLMSA PGFHVPDSSQ KINDFGASRK VLNFPHFSAP RNVSSPSQKT AVNLSQSEAR  240
EHSVITVGSS HCGSNHIPQD QDVNRVSSSG VWATTNNATL SAEPEAIDCI HRRFPRSERG  300
KSEIIEPTVA SSSGGSGSTG IGRTCSQSTR EHDQKRKGTE QEALEEQSEA TELKSADGNK  360
LSQRSRRSRA AEVHNLSERR RRDRINDKMR ALQQLIPNSN KTDKASMLEE AIEYLKSLQF  420
QLQPMNALRY GSQAMQHSET MIAGSNNSSG PMSGTANVAN VDDAISGKTG SSTFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1377382ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g01970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429414.10.0PREDICTED: transcription factor PIF4
RefseqXP_017429416.10.0PREDICTED: transcription factor PIF4
TrEMBLA0A0L9UVN20.0A0A0L9UVN2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RJL00.0A0A0S3RJL0_PHAAN; Uncharacterized protein
STRINGXP_007141451.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.15e-24phytochrome interacting factor 3-like 6