PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g01860.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARF
Protein Properties Length: 2586aa    MW: 287968 Da    PI: 7.2107
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g01860.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.23.1e-23159260199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  Vang01g01860.1 159 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 249
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  Vang01g01860.1 250 KNQLLLGIRRA 260
                     9999****997 PP
2Auxin_resp119.92e-39285368183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Vang01g01860.1 285 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 368
                     79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-48144288IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-41152274IPR015300DNA-binding pseudobarrel domain
CDDcd100174.74E-21158259No hitNo description
PROSITE profilePS5086312.548159261IPR003340B3 DNA binding domain
PfamPF023621.9E-21159260IPR003340B3 DNA binding domain
SMARTSM010191.8E-24159261IPR003340B3 DNA binding domain
PfamPF065072.8E-34285368IPR010525Auxin response factor
PfamPF023094.3E-8778873IPR033389AUX/IAA domain
SuperFamilySSF542774.25E-7782865No hitNo description
PROSITE profilePS5174523.246789875IPR000270PB1 domain
PROSITE profilePS513757.89210411075IPR002885Pentatricopeptide repeat
PfamPF015350.7710441073IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.39310761111IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.17711121146IPR002885Pentatricopeptide repeat
PfamPF130413.7E-711151159IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.89811471181IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.3E-511491183IPR002885Pentatricopeptide repeat
PfamPF130413.1E-1311811230IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.03811821216IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.5E-611841218IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.4E-911911300IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137511.75112171251IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.9E-612201252IPR002885Pentatricopeptide repeat
PfamPF128543.8E-612471278IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.0112521282IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.0E-412551278IPR002885Pentatricopeptide repeat
PfamPF130413.2E-1612821332IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.41912831318IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.4E-712851320IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.4313191353IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.3E-713211355IPR002885Pentatricopeptide repeat
PfamPF128547.0E-1113491381IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.44113541388IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.1E-813561389IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.30713891423IPR002885Pentatricopeptide repeat
PfamPF130417.0E-1813901436IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.4E-913921454IPR011990Tetratricopeptide-like helical domain
TIGRFAMsTIGR007565.0E-1013931425IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.02714241458IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.8E-614261459IPR002885Pentatricopeptide repeat
PfamPF130412.1E-1514591507IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.65414591493IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.1E-614611494IPR002885Pentatricopeptide repeat
SuperFamilySSF484525.51E-714641556IPR011990Tetratricopeptide-like helical domain
Gene3DG3DSA:1.25.40.103.4E-914911591IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137513.03314941528IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.2E-814961529IPR002885Pentatricopeptide repeat
PfamPF130415.0E-1715281577IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.79215291563IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.8E-915321565IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.78615641594IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.1E-615661592IPR002885Pentatricopeptide repeat
SuperFamilySSF484525.51E-716411758IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.29816501680IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.002716531679IPR002885Pentatricopeptide repeat
PfamPF015350.01116531679IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.95816861720IPR002885Pentatricopeptide repeat
PfamPF015350.5516951714IPR002885Pentatricopeptide repeat
PfamPF130417.9E-1417201769IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.40217211755IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.8E-517231756IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.36917561790IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.1E-417581791IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.30617911825IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.4E-417911878IPR011990Tetratricopeptide-like helical domain
TIGRFAMsTIGR007569.5E-417931827IPR002885Pentatricopeptide repeat
PfamPF015350.7117931821IPR002885Pentatricopeptide repeat
PfamPF128541.1E-618221851IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.42218261860IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.3E-518281861IPR002885Pentatricopeptide repeat
PfamPF130412.2E-1218601909IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.92818611895IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.001518631897IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.5418961930IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.5E-1018981932IPR002885Pentatricopeptide repeat
PfamPF130411.3E-1519301979IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.24419311965IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.1E-719331967IPR002885Pentatricopeptide repeat
SuperFamilySSF484525.51E-719351990IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137512.49619662000IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.9E-519682001IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.4E-419692104IPR011990Tetratricopeptide-like helical domain
PfamPF130415.2E-1720002049IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.87120012035IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.9E-720032037IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.14820362070IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.1E-620392072IPR002885Pentatricopeptide repeat
PfamPF128542.4E-1320662098IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.69320712105IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.1E-720732107IPR002885Pentatricopeptide repeat
PfamPF130412.2E-1721052154IPR002885Pentatricopeptide repeat
PROSITE profilePS5137514.03121062140IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.6E-921082142IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.51521412175IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.7E-1021432177IPR002885Pentatricopeptide repeat
PfamPF128541.3E-1221712204IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.91821762206IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.4E-521782206IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.57822122246IPR002885Pentatricopeptide repeat
PfamPF130415.0E-1522132260IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.6E-522152247IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.46822472281IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.32822822316IPR002885Pentatricopeptide repeat
PfamPF015350.1322852314IPR002885Pentatricopeptide repeat
SuperFamilySSF1019362.75E-724782520IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 2586 aa     Download sequence    Send to blast
LEVASDDGVL WVLLIFGGWF GTSPVVIAPS MKLSSSGFNQ PGEEEGEKKC LNSELWHACA  60
GPLVSLPPVG SRVVYFPQGH SEQVAASTNR AVDAHIPNYP NLPPQLICQL HNVTMHADAE  120
TDEVYAQMTL QPLSPQEQKE VYLMPAELGT PSKQPTNYFC KTLTASDTST HGGFSVPRRA  180
AEKVFPPLDY SQQPPAQELI ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG  240
DSVLFIWNEK NQLLLGIRRA NRPQTIMPSS VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN  300
PRASPSEFVI PLAKYVKAVY HTRVSVGMRF RMLFETEESS VRRYMGTITG ISDLDPVRWP  360
NSHWRSVKVG WDESTAGDRQ PRVSLWEIEP LTTFPMYPSP FPLRLRRPWP TGLPSLYGLK  420
DGDMGIGSPF MWLQGGLGDQ GMQSLNFQGL GVTPWMQPKL DSSMPGLQPE LYQAMASSAF  480
QEMRTIDPSK SSQPLLQFQQ TSNVPSAHTS EVQRQVLPQS QPQSTLLQNF QENQVPAQSQ  540
LLQQQLYRYH PYGDQRQQHQ QLKNLPVQQQ LPNVISPLSN FASGTQSQSP PMQALATHCQ  600
QQSFPEPIRN HISGSDVSPI QSLLGTFSHD GTSQLLNLSG SNSVISSASI LPKQMAVEPQ  660
LPSASAQCVL PQVENLGTSQ SNVSELAVLP PFPGREHSAY HGAADPQSNL LFGINIDPSS  720
LMLQNGMSNL RNMGSVNDSL SLPFSASNCG GTTGTDFPLS SNMTTSSCVD ESGFLQSSEN  780
VDQANTPTGT FVKVHKSGSF GRSLDISKFS SYDELRSELA RMFGLEGQLE DPKTQRSGWQ  840
LVFVDRENDI LLLGDDPWQE FVNNVWYIKI LSPLEVQQMG KGVSPSTSAP GHKLSTSGNS  900
CDNYASQQEL RSSRNGMASM GSRWLAPLGL VSPLQSLTFM LKTFKSSTNV SRVSLLRFKI  960
PFFPLCTTAP GSNLYDNECE SSDTETEWER LLKPFDLKQL RRSLAPISPF QLCKLLVLPL  1020
DIPTSMELFQ RAGAQKGYCH TFDVYCLLID KLGAVGDFKV VENLLKQMKD EGVVFKESLF  1080
ILIMKHYGKA GLPGQATRLL LDMWGVYSCD PTFKSYNVVL QILVDGNCPR VAPNVFYDML  1140
SRGVSPTVYT FGVVMKALCM VNEVDSACSL LRDLAKHGCV PNSVIYQTLI HALCENNRVS  1200
EAMRLLEDMF LMCCEPDVQT FNDVIRGLCR AGRIHEAAKL VDRMFLRGFS ADALTYGYLM  1260
HGLCRMGQVD EARTLLNKIP SPNTVLYNTL INGYVSSGRF EEAKGLLYNS MVTAGYEPDA  1320
YTFNIMIDGF CKKGYLVSAL EFLSEVVAKG FEPNVITYTI LINGFCKQGR FEEVAEILNS  1380
MSTKGLSLTT VGYNCLIGAL SKDGKIEEAL QLFREMSTKG CKPDIYTFNS LIHGLCMNDK  1440
MENALSLYHD MFLEGVIANT VTYNTLISAL LMRDSVQQAF KLVDEMLFKG CPLDSITYNG  1500
LIKVLCRTGS VEKGLGLFEE MLGKGIFPTV TTCNILISAL CRTGKVNDAL KFLRDMIHRG  1560
LTPNVVSYNC LINGLCKMGH VQEALNIFNR LQGSLRAMWY INPRTAAPGH KLSTSGISCD  1620
NYVSQQDWED PLKALEMFNS AKKESGFKHT LLTYKCMVQK LGHHGEFEEM EKVLSEMREY  1680
VNNALLEGAY IEAMKNYGRK GKVQEAVDTF ERMDFYNCDP SVHSYNAIMN ILVEYGYHDQ  1740
AHKVYMRMRD RGVESDVYTY TVRIKSFCRT SRPHAALRLL RNMPELGCDF NAVAYCTVVA  1800
GLYNSGDHAD ASVLFDEMLA RCLCPDVVTF NKLLHVLCKK GLVSESEKLL GKALKRGVCP  1860
NLFTFNIFVQ GLCREGALDR AVRLLDSVLR EGLSLDVVTY NILICGLCRN SWVVEAEDYL  1920
RKMVNDGFEP DAFTYNSIID GYCKKGMVQC ANRVLKDAIF RGFKPDEFTY CSLINGFCRD  1980
GDPDQAMAVF KDGLGKGLRP SVVVYNTLIK GLSQQGLILP ALQLMNEMSE NGCQPNIWTY  2040
NLVINGLCKM GCVSDATHLV DDAIAKGCLP DIFTYNTLID GYCKQMKLDN ATEVVNRMWS  2100
LGMTPDVITY NTLLNGLCKA AKSEEVMEIF KAMEEKGCAP NIVTYNIIVE SLCKAKKVSE  2160
AVDLLGEMKS KGLKPDVVSF GTLITGFCKI GDLDGAYRLF RRMEKQYDVC HTTATYNIII  2220
SAFSEQLNMI MAMKLFSKMK GNGCDPDNYT YRVVIDGFCK MGNISQGYNF LLENIEKGFT  2280
PSLTTFGRVL NCLCAKDKVP EAVSIIHCMV QKGIIPNTVN TIFEADKKVV AAPKILVEDL  2340
LKKGHITYHT YELLHDGIRD RKIPKKRLPT ANSLHRGAKY LELPVDVYYY DTEFRNANLP  2400
DMSLQAIFYI QNILRIFGEA AMLMKIRSTK IRTHLVYPYN LSGIQEQKVV YLLRAELSNP  2460
SKQPTDTPAK HLLQVIPSTH GGFYFPRRAA EKDYSQQPPA RELIAGDVHD NEWKFAHISW  2520
GCEQCVAHKI LSPLEVQQIG KGVSPSTSAP GHKLSASGNS CDNYVSQQEL RRSRNGMASM  2580
GYFHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1554738947388Auxin response factor 5
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g01860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027941358.10.0uncharacterized protein LOC114195167
TrEMBLA0A4D6MN930.0A0A4D6MN93_VIGUN; Auxin response factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0auxin response factor 8