PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g01710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 114aa MW: 13104.1 Da PI: 11.7197 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.4 | 2.6e-11 | 70 | 101 | 3 | 38 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 ykG+r+++ +g+W++eIrdp++ r++lg+f t Vang01g01710.1 70 YKGIRRRP-WGKWAVEIRDPRK---GIRVWLGTFAT 101 9*******.**********954...3********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.2E-15 | 69 | 102 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.486 | 69 | 101 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-4 | 69 | 112 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-9 | 69 | 101 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.6E-6 | 70 | 81 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.7E-6 | 70 | 101 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.38E-14 | 70 | 99 | No hit | No description |
PRINTS | PR00367 | 1.6E-6 | 92 | 108 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MCGGSIISDF IEVHIKNAPE STTHHLFSQL HTFNATSSST LIKVEETCEK VKNSRVIAEK 60 GGALVWKNTY KGIRRRPWGK WAVEIRDPRK GIRVWLGTFA TRLRHRRRTH PRR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g01710.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 1e-116 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017428584.1 | 2e-63 | PREDICTED: ethylene-responsive transcription factor RAP2-3-like | ||||
Swissprot | P42736 | 8e-20 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A0S3RL44 | 2e-77 | A0A0S3RL44_PHAAN; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 1e-22 | ERF family protein |