PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g01360.1
Common NameLR48_Vigan785s001500
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 539aa    MW: 60591.8 Da    PI: 5.3633
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g01360.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS429.62.5e-1311695382374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +e L +cA av+ +d+e +++l+++l++++s +g+p+qRl ay++eAL arla+s+s++ykal+++e +     e l+ ++l++e+sP+lkf+++
  Vang01g01360.1 169 KEMLCACAIAVAGNDMETTEWLMSELRKMVSVSGNPIQRLGAYMLEALVARLASSGSTIYKALKCKEPT---GRELLSHMHLLYEISPYLKFGYM 260
                     789*****************************************************************9...999999***************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN aI e v+ge++vHiiDf+i+qG+QW++L+qaLa R +gpp++RiTg+++++s   ++  le +gerL+ +A++ +vpfef++l + + +++
  Vang01g01360.1 261 SANGAIAEVVKGETEVHIIDFQINQGIQWVSLIQALAGRHGGPPKIRITGFDDSTSAyaREGGLEIVGERLSALAQSYNVPFEFRAL-EVAPTEV 354
                     *****************************************************998899999************************6.7778899 PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     e+++L+++pgEa+aVn++++lh+l+desv+ +++r ++L+l k lsPk+v++veqe+ +++ +F+ rf+e+++yy a+f+s+++ lpre++eri+
  Vang01g01360.1 355 EIKDLELRPGEAIAVNFAMMLHHLPDESVDGQNHRGRLLRLAKCLSPKIVTLVEQESHTSNLPFFPRFVETMNYYLAIFESIDVALPRENKERIN 449
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vE+++l+re+vn+vacegaer+erhe l++Wr+r+++aGF+p+pl++++++++k l + ++++ y++ee++g+l+lgW++++L++ +aWr
  Vang01g01360.1 450 VEQHCLAREVVNLVACEGAERVERHELLKNWRSRFTMAGFSPYPLNSFITSSIKNLQQSYQGH-YTLEERDGALCLGWMNQALITSCAWR 538
                     *************************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.391142519IPR005202Transcription factor GRAS
PfamPF035148.5E-129169538IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MQMSQKHNMS YEAVQNLGSC CFLQSENLDY YSSSDNSSHA TYPSVRTLEQ YCTLESSTKN  60
SFPSLNSPTT VSFSPNHSPL SKLQPKSYVL SSHSSLEITN DSIENESCLT HNDNELRHKI  120
RELESAMLGH DADILDMYDT VIPEESDSFL LEAERWKKMM EMISRGDLKE MLCACAIAVA  180
GNDMETTEWL MSELRKMVSV SGNPIQRLGA YMLEALVARL ASSGSTIYKA LKCKEPTGRE  240
LLSHMHLLYE ISPYLKFGYM SANGAIAEVV KGETEVHIID FQINQGIQWV SLIQALAGRH  300
GGPPKIRITG FDDSTSAYAR EGGLEIVGER LSALAQSYNV PFEFRALEVA PTEVEIKDLE  360
LRPGEAIAVN FAMMLHHLPD ESVDGQNHRG RLLRLAKCLS PKIVTLVEQE SHTSNLPFFP  420
RFVETMNYYL AIFESIDVAL PRENKERINV EQHCLAREVV NLVACEGAER VERHELLKNW  480
RSRFTMAGFS PYPLNSFITS SIKNLQQSYQ GHYTLEERDG ALCLGWMNQA LITSCAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-5817553726378Protein SCARECROW
5b3h_A2e-5817553725377Protein SCARECROW
5b3h_D2e-5817553725377Protein SCARECROW
5hyz_A2e-581725388375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g01360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017410627.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A0L9TH690.0A0A0L9TH69_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RJD70.0A0A0S3RJD7_PHAAN; Uncharacterized protein
STRINGXP_007142381.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]