PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g00870.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YA
Protein Properties Length: 338aa    MW: 37644.7 Da    PI: 8.5896
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g00870.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.73.3e-32186242158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+Rg+gGrF
  Vang01g00870.1 186 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKVRKPYLHESRHQHAMRRARGNGGRF 242
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.5E-35184245IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.469185245IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.8E-28187242IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.7E-24188210IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860190210IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.7E-24219242IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSMSCEVVIR VLLTPHWQHE EYNFHVQYTF VGIWRYGMQS KSETAKPRSN PHSFTPNTVY  60
SEPWWRGIHY NSAPKAMSGV NASNSSSLER PNADSESSEG QSLSNNEMNE EDDDATKESQ  120
PTAPNQSGNY GQDHQAMLRS SSSAPSRRDD CLPHAPQLEL IGHSFGYAPF IGMPHARMAL  180
PLEMAQEPVY VNAKQYQGIL RRRQARAKAE LEKKLIKVRK PYLHESRHQH AMRRARGNGG  240
RFAKKTEVEA SKHTNKEKDT GAAGPVSLPQ SVSSSGLGPV PSEVHERFEK HNYANVLQSS  300
SAFCLHSGER VEEGDCSGQQ RGSISSEQSS QRRLAIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-18186242258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g00870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017430454.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like
SwissprotQ945M93e-55NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A0L9UU710.0A0A0L9UU71_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RIU30.0A0A0S3RIU3_PHAAN; Uncharacterized protein
STRINGXP_007142467.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.46e-57nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]