PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g00620.1 | ||||||||
Common Name | LR48_Vigan07g003500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GRAS | ||||||||
Protein Properties | Length: 544aa MW: 60725.6 Da PI: 6.3892 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 459.7 | 1.7e-140 | 173 | 543 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++ L++cA+a++++dl +aq+l+ +l++++s +gdp+qRl ay++e+L arla s+s++ykal+++e + s+e l+++++++ev+P++kf++ Vang01g00620.1 173 LKHILVACAKAIADNDLLMAQWLMDELRQMVSVSGDPIQRLGAYMLEGLVARLAASGSSIYKALRCKEPE---SAELLSYMHILYEVCPYFKFGY 264 6899*****************************************************************9...9********************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + aN aI ea++ eervHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s + l+ +g+rL+k+Ae+++vpfef++ +a + d Vang01g00620.1 265 MSANGAIAEAMKDEERVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSQSAyaRGGGLHIVGRRLSKLAEHFKVPFEFHA-AAISGCD 358 ******************************************************999899999************************.88899** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++l++L v+pgEalaVn++++lh+++desvs++++rd++L+lv+slsPkvv++veqe+++n++ F+ rfle+l+yy+a+f+s++++lpr ++eri Vang01g00620.1 359 VQLHNLGVRPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVRSLSPKVVTLVEQESNTNTAAFFPRFLETLDYYTAMFESIDVTLPRIHKERI 453 *********************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +vE+++l+r++vn++aceg er+erhe l+kWr+r+ +aGF+p+pls+ ++ ++k ll++++++ yr+ee++g+l+lgW++r Lv+ +aW+ Vang01g00620.1 454 NVEQHCLARDLVNIIACEGVERVERHEVLGKWRSRFAMAGFTPYPLSSLVNGTIKKLLENYSNR-YRLEERDGALYLGWMNRDLVASCAWK 543 **************************************************************77.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 70.795 | 147 | 524 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.0E-138 | 173 | 543 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0004871 | Molecular Function | signal transducer activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 544 aa Download sequence Send to blast |
MQASEQHRSS SMYYQPLQQI EAYCLPQYGN LNQQLYYHGG SHGTHFSTPS SSELYCTLES 60 SSVAGSFTLY NSPSTVSFSP NGSPISQHDS QSYPPDQYHS PENAYGSPLS GSCITDDLSS 120 FKHKLRELES VMLGPDSDNL DSYDSAISNG NNFASLEMDS WRQTMVAISS KNLKHILVAC 180 AKAIADNDLL MAQWLMDELR QMVSVSGDPI QRLGAYMLEG LVARLAASGS SIYKALRCKE 240 PESAELLSYM HILYEVCPYF KFGYMSANGA IAEAMKDEER VHIIDFQIGQ GSQWITLIQA 300 FAARPGGPPH IRITGIDDSQ SAYARGGGLH IVGRRLSKLA EHFKVPFEFH AAAISGCDVQ 360 LHNLGVRPGE ALAVNFAFML HHMPDESVST QNHRDRLLRL VRSLSPKVVT LVEQESNTNT 420 AAFFPRFLET LDYYTAMFES IDVTLPRIHK ERINVEQHCL ARDLVNIIAC EGVERVERHE 480 VLGKWRSRFA MAGFTPYPLS SLVNGTIKKL LENYSNRYRL EERDGALYLG WMNRDLVASC 540 AWK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 8e-59 | 177 | 543 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g00620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017430780.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_017430781.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_017430782.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_017430783.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A0L9UUC7 | 0.0 | A0A0L9UUC7_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RIR1 | 0.0 | A0A0S3RIR1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007142502.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1653 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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