PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0196s00170.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NF-YA

Protein Properties

Length: 181aa MW: 20434.1 Da PI: 10.6239

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0196s00170.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	93.3	2.9e-29	29	85	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+ +q a le+++kl +k+rkpylheSRh hAl+R+RgsgGrF Vang0196s00170.1 29 EEPIFVNAKQYHAILRGKQYWATLESQNKL-IKERKPYLHESRHLHALKRARGSGGRF 85 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	9.0E-33	27	88	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	33.756	28	88	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.3E-23	30	85	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.1E-19	31	53	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.1E-19	62	85	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MLSKYGQIHP AQLIGMPTAR IPLPLNLSEE PIFVNAKQYH AILRGKQYWA TLESQNKLIK 60 ERKPYLHESR HLHALKRARG SGGRFLNTKK HEESKPTSQN HDIDVSRCTH LNLRGNMSES 120 KARQLNYRDG ASTTTCSDIS SASNSSDLFQ QHQSDIRLCA SSNIGHSSRK SKRKKDLNFI 180 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-20	29	100	2	71	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	175	RKSKRKKD

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0196s00170.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017417946.1	1e-107	PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
Swissprot	Q93ZH2	1e-40	NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
Swissprot	Q9LNP6	1e-40	NFYA8_ARATH; Nuclear transcription factor Y subunit A-8
TrEMBL	A0A0L9VJY4	1e-117	A0A0L9VJY4_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3TA38	1e-119	A0A0S3TA38_PHAAN; Uncharacterized protein
STRING	XP_007135485.1	7e-76	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10120	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	1e-37	nuclear factor Y, subunit A3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Djami-Tchatchou AT,Ntushelo K Expression Profile of Stress-responsive Arabidopsis thaliana miRNAs and their Target Genes in Response to Inoculation with Pectobacterium carotovorum subsp. carotovorum. Pak. J. Biol. Sci., 2017. 20(3): p. 147-153 [PMID:29023006]