PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang0190s00310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 181aa MW: 20335.8 Da PI: 9.7042 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.5 | 7.9e-19 | 29 | 78 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +gr++AeIrdps+ + r++lg+f+ta+eAa a+++a+++++g Vang0190s00310.1 29 RYLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTADEAALAYDRAARAMRG 78 588******.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.3E-32 | 29 | 92 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.09E-28 | 29 | 85 | No hit | No description |
PROSITE profile | PS51032 | 20.837 | 29 | 86 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.2E-29 | 29 | 85 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.75E-21 | 29 | 86 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.4E-8 | 30 | 41 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.4E-12 | 30 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-8 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 181 aa Download sequence Send to blast |
MNPRTTSSSS KTKKKQTAPE PHHTAWGGRY LGVRRRPWGR YAAEIRDPST KERHWLGTFD 60 TADEAALAYD RAARAMRGSR ARTNFVYADT TPGSSLTPII SPDQQPLPQP DPVSWQRIEV 120 VLEEDDSNNA KLLWLMTAAI CDEEVAIGGF KSGRGRDVDG DLKEILRRRE HKRDLGFIYV 180 * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-19 | 27 | 85 | 3 | 62 | ATERF1 |
3gcc_A | 1e-19 | 27 | 85 | 3 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Cell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00509 | DAP | Transfer from AT5G13910 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang0190s00310.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By imbibition. {ECO:0000269|PubMed:16339853}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017418129.1 | 2e-78 | PREDICTED: ethylene-responsive transcription factor LEP-like | ||||
Swissprot | Q9M644 | 1e-40 | LEP_ARATH; Ethylene-responsive transcription factor LEP | ||||
TrEMBL | A0A0L9U7Q9 | 6e-77 | A0A0L9U7Q9_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RW81 | 6e-77 | A0A0S3RW81_PHAAN; Uncharacterized protein | ||||
STRING | XP_007161805.1 | 1e-76 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3904 | 31 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13910.1 | 2e-24 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|