PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0190s00010.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 388aa MW: 44106.4 Da PI: 5.1751 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 84 | 3e-26 | 66 | 207 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....... 77 p G++F+P+d el+ e+L+ k+ + + +e+i++++ i++++P++Lp +k++ + + F+k+ ++yat++rk+r+ Vang0190s00010.2 66 PLGVKFDPSDVELL-EHLAGKCGVGNtqpdmfI--KEFISTLEgdqgICYTHPENLP-GAKKDGSYFHIFHKTINAYATSQRKRRKihhpqgl 154 89************.999999877664555332..333443323344**********.55566778899****************85665555 PP NAM 78 .tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ W++tg++k++++ +g +g kk++v++ +++ +k+ k++Wvmh+y+l Vang0190s00010.2 155 sEEHWHWHKTGRTKAIMQ-NGMCKGFKKIMVLHvrSKSGSKPFKSNWVMHQYHL 207 444667************.999***********6544556666*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.75E-31 | 50 | 226 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.312 | 65 | 226 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-11 | 66 | 207 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
LDVVFFFFDT MARSWLIDFG GFAKKVKNTT LSSADQIKDC GAYRECPNCH YRIDNSDVSS 60 EWPGFPLGVK FDPSDVELLE HLAGKCGVGN TQPDMFIKEF ISTLEGDQGI CYTHPENLPG 120 AKKDGSYFHI FHKTINAYAT SQRKRRKIHH PQGLSEEHWH WHKTGRTKAI MQNGMCKGFK 180 KIMVLHVRSK SGSKPFKSNW VMHQYHLGTE KNEKEGEYVV SKFFYQQQKQ TEKNEDNPMV 240 EDLDNIVSRT SPRTPKPNPP HPPRAGNSVD CDDCIDETVP LPFVQDLDNS ACLPGELQAE 300 KHTEYDGLDD ILLCKEILDS SDLLNDYGLD SSNLCDLEFY DNQIARNDNE SCGISVLDTL 360 ELDTPDFDHS NLNFCSQYSI LEWMGRL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0190s00010.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017417584.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like isoform X2 | ||||
Swissprot | Q6NQK2 | 1e-72 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A0S3RW40 | 0.0 | A0A0S3RW40_PHAAN; Uncharacterized protein | ||||
STRING | XP_007141004.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 8e-91 | NAC domain containing protein 44 |