PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0184s00180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 261aa MW: 29582.7 Da PI: 9.7815 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.6 | 1.2e-32 | 29 | 169 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...... 79 lp+G++F+Ptd+e++ e+L++kv+++ ++l+ +++ +i+ ++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ Vang0184s00180.1 29 LPAGVKFDPTDQEIL-EHLEAKVRSDIHKLHPlidefipTLEGEnGICCTHPEKLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKVHtdadgs 119 799***********9.99*****99984443333332222333336**********.555555677******************744446555 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 + +W++tgk+++v+ +g+l+g kk+Lv+y++ +++k+ekt+Wvmh+y+l Vang0184s00180.1 120 ETRWHKTGKTRPVYI-SGKLKGYKKILVLYTNyrKQRKPEKTNWVMHQYHL 169 788************.999***********5444788889*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-37 | 24 | 188 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.704 | 29 | 188 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-15 | 30 | 169 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MAKDSVVKLS MMLRAKPLKA AGIHDLPGLP AGVKFDPTDQ EILEHLEAKV RSDIHKLHPL 60 IDEFIPTLEG ENGICCTHPE KLPGVSKDGL IRHFFHRPSK AYTTGTRKRR KVHTDADGSE 120 TRWHKTGKTR PVYISGKLKG YKKILVLYTN YRKQRKPEKT NWVMHQYHLG NNEEEKEGEL 180 VVSKVFYQTQ PRQCGSLMKD SYPAKLNGES VHEVTNHKST GFVEFYNNSF VSFDQGDQHR 240 PSSAQLVTHF PVHDGATFIP * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0184s00180.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014491769.1 | 0.0 | NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 1e-110 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A1S3TDC5 | 0.0 | A0A1S3TDC5_VIGRR; NAC domain-containing protein 73 | ||||
STRING | XP_007149803.1 | 1e-166 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1228 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-100 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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