PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0183s00090.1
Common NameLR48_Vigan11g068900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 607aa    MW: 67586.9 Da    PI: 6.3553
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0183s00090.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3143.3e-962506053374
              GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                       ++L++ Ae +++g+   aq +Larl+++ sp g+p+qR+a+y++eAL + l++   +  + ++ s+    + + ++ a+k fse+sP+l+f++
  Vang0183s00090.1 250 DQLYKTAELIEAGNPVHAQGILARLNHQLSPIGKPFQRAAFYMKEALMSLLHS---NAHSFMAFSPI---SFIFKIGAYKSFSEISPVLQFAN 336
                       689*************************************************9...44444445555...59********************* PP

              GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                       +t+Nqa+ eave+ +r+H+iDfdi+ G+QW +++q++a R++ +psl++T+++sp++ ++ el+ t+e+L ++A+ ++v+fef+vl  ++l++
  Vang0183s00090.1 337 FTCNQALIEAVERFDRIHVIDFDIGFGVQWSSFMQEIALRSSAAPSLKVTAIVSPSTCDEVELNFTKENLMQYAKDINVSFEFSVLNIESLHS 429
                       **************************************************************************************9999999 PP

              GRAS 189 leleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                        +   L ++  +Ea+aVn+ ++ ++        +s  ++ L++vk+l+Pkv+v  ++ +d+ + s+ +  ++ l++ysal+dsl+a    + +
  Vang0183s00090.1 430 PSSPLLgQFFDNEAIAVNMPVSSFTNN------PSLFPSALHFVKQLRPKVLVTLDRICDRIDLSLPTNAVHVLQCYSALLDSLDAV-NVNLD 515
                       98888866778**********666554......444457*********************************************665.34669 PP

              GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                         +k+Er++++++i++++   + +    +e+l  Wr+ + ++GF+p ++s+++++qa++l+++ +++g++ve +  slvl+W++++L+svS W
  Vang0183s00090.1 516 VLQKIERHFIQPAIKKIILGHHHS----QEKLPPWRNLFLQSGFSPFTFSNFTEAQAECLVQRAPVRGFHVERKPSSLVLCWQRKELISVSTW 604
                       99*****************99998....9**************************************************************** PP

              GRAS 374 r 374
                       r
  Vang0183s00090.1 605 R 605
                       8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.378222585IPR005202Transcription factor GRAS
PfamPF035141.1E-93250605IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MDDWEGQDQS ILRLIMGDVE DPSAGLSKLL QSTACGSQSV DFNAGFGVVD QGLNMVSGAI  60
DPSGNYPAGF PFIAENIDAH NGKPGSVAGQ VSESVVFSAN NPLMVSPSVS PGVFTSQQQH  120
EFGVVDEKPQ VINPQFMLNQ NQVQFSENPS FFVPLMYPQV QEQQVFPQHQ AKRPLFDTIG  180
HNYQAPRLPL LDSGQEVFGR RQQTQLPLFP HHMQQQQHQH QSIVMPSAKQ QKVSSAGDDA  240
SHQLQQAIFD QLYKTAELIE AGNPVHAQGI LARLNHQLSP IGKPFQRAAF YMKEALMSLL  300
HSNAHSFMAF SPISFIFKIG AYKSFSEISP VLQFANFTCN QALIEAVERF DRIHVIDFDI  360
GFGVQWSSFM QEIALRSSAA PSLKVTAIVS PSTCDEVELN FTKENLMQYA KDINVSFEFS  420
VLNIESLHSP SSPLLGQFFD NEAIAVNMPV SSFTNNPSLF PSALHFVKQL RPKVLVTLDR  480
ICDRIDLSLP TNAVHVLQCY SALLDSLDAV NVNLDVLQKI ERHFIQPAIK KIILGHHHSQ  540
EKLPPWRNLF LQSGFSPFTF SNFTEAQAEC LVQRAPVRGF HVERKPSSLV LCWQRKELIS  600
VSTWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-2825460425378Protein SCARECROW
5b3h_A3e-2825460424377Protein SCARECROW
5b3h_D3e-2825460424377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0183s00090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017442411.10.0PREDICTED: scarecrow-like protein 6
RefseqXP_017442412.10.0PREDICTED: scarecrow-like protein 6
SwissprotO813161e-126SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A0L9VRF40.0A0A0L9VRF4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SXY60.0A0A0S3SXY6_PHAAN; Uncharacterized protein
STRINGXP_007134753.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-128GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]