PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0183s00080.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GRAS

Protein Properties

Length: 759aa MW: 84309.8 Da PI: 6.4155

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0183s00080.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	321.7	1.5e-98	402	757	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 ++L++ Ae +++g+ aq +Larl+++ sp g+p+qR+a+y++eAL + l++ + ++ + s+ +s+ ++ a+k fse+sPi++f++ Vang0183s00080.1 402 DQLYKTAELIEAGNPVHAQGILARLNHQLSPIGRPFQRAAFYMKEALLSLLHS------NPHNVLAFSPISSIFKIGAYKSFSEISPIIQFAN 488 689***********************************************9......4445555555559***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188 +t NqaI ea+e+ +r+HiiDfdi+ G+QW +++qaLa R++g psl+iT+++sp s ++ el+ t+e+L+++A+ ++++fe nvl ++l++ Vang0183s00080.1 489 FTSNQAIIEALERFDRIHIIDFDIGFGVQWSSFMQALAMRSNGVPSLKITAIVSPLSYDEFELNVTQEKLNQYAKDINMSFELNVLSIESLSS 581 *********************************************************************************97777776 PP GRAS 189 le.leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 + + + + +Ea+aVn+ l+ ++ + + + vL++vk+l+Pkvvv ++++d +++F + +++al++ysal++sl+a + + Vang0183s00080.1 582 PScPLSVQYYDNEATAVNMPLSCFTNY------PTLFPLVLRFVKQLRPKVVVTLDRNCDQLDAPFSTNIVHALHCYSALLESLDAV-NVNLD 667 63144556666******999988......334468*****************************************665.34669 PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +k+E++++ +++++ ++c ++ +e+l +Wr+++ + GF+p ++s+++++qa++l++k +++g+++e ++ slvl+W++++L++vS W Vang0183s00080.1 668 VLQKIEKHFILPALKKTITCPLRS----QEKLPTWRNMFLQYGFSPFTFSNFTEAQAECLVQKAPVRGFQLERKHSSLVLCWQRKELITVSTW 756 99****************99....9************************************************************** PP GRAS 374 r 374 r Vang0183s00080.1 757 R 757 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	44.925	374	737	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.3E-96	402	757	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 759 aa Download sequence Send to blast
MAFFLHCCCL EHNKPQIQKE KSKLYGCSSF HLWNPANPIC SKIAAFKPMK AMPFPFEEFQ 60 GKGVLDFSSG SDSFSLLLHH PQAKWTIDKE DYCYVGSTEP TSVLDSRRSP NSSTMSSSLG 120 SSNTISKGGS GGSTNNTTCY TPTLSQNPPQ TALETSTEKC GVRMEDWESQ DQSILRLIMA 180 DAEDPSVGLS KLFQGSGCGS QQTVDFNAGF GVVDQGLNMV SIVDPSGNYP GFPFIAENID 240 GHNGSKTGSL SVGESMFSVS GNNSLLLSTS PGGFNSQQQV IGEVDEKPQV INPQFELNQT 300 QLQFSENPSF FVPMMYPQLQ EQQVFSQHPA KRPVFEPAGY SYQAPRLPLL DSGQEMFGRR 360 QQTQLPLFPH HMPPQVVPSA KPQKASSTGE DASQQLQQAI FDQLYKTAEL IEAGNPVHAQ 420 GILARLNHQL SPIGRPFQRA AFYMKEALLS LLHSNPHNVL AFSPISSIFK IGAYKSFSEI 480 SPIIQFANFT SNQAIIEALE RFDRIHIIDF DIGFGVQWSS FMQALAMRSN GVPSLKITAI 540 VSPLSYDEFE LNVTQEKLNQ YAKDINMSFE LNVLSIESLS SPSCPLSVQY YDNEATAVNM 600 PLSCFTNYPT LFPLVLRFVK QLRPKVVVTL DRNCDQLDAP FSTNIVHALH CYSALLESLD 660 AVNVNLDVLQ KIEKHFILPA LKKTITCPLR SQEKLPTWRN MFLQYGFSPF TFSNFTEAQA 720 ECLVQKAPVR GFQLERKHSS LVLCWQRKEL ITVSTWRC*

Sequence ? help Back to Top

Protein Sequence Length: 759 aa Download sequence Send to blast

MAFFLHCCCL EHNKPQIQKE KSKLYGCSSF HLWNPANPIC SKIAAFKPMK AMPFPFEEFQ  60
GKGVLDFSSG SDSFSLLLHH PQAKWTIDKE DYCYVGSTEP TSVLDSRRSP NSSTMSSSLG  120
SSNTISKGGS GGSTNNTTCY TPTLSQNPPQ TALETSTEKC GVRMEDWESQ DQSILRLIMA  180
DAEDPSVGLS KLFQGSGCGS QQTVDFNAGF GVVDQGLNMV SIVDPSGNYP GFPFIAENID  240
GHNGSKTGSL SVGESMFSVS GNNSLLLSTS PGGFNSQQQV IGEVDEKPQV INPQFELNQT  300
QLQFSENPSF FVPMMYPQLQ EQQVFSQHPA KRPVFEPAGY SYQAPRLPLL DSGQEMFGRR  360
QQTQLPLFPH HMPPQVVPSA KPQKASSTGE DASQQLQQAI FDQLYKTAEL IEAGNPVHAQ  420
GILARLNHQL SPIGRPFQRA AFYMKEALLS LLHSNPHNVL AFSPISSIFK IGAYKSFSEI  480
SPIIQFANFT SNQAIIEALE RFDRIHIIDF DIGFGVQWSS FMQALAMRSN GVPSLKITAI  540
VSPLSYDEFE LNVTQEKLNQ YAKDINMSFE LNVLSIESLS SPSCPLSVQY YDNEATAVNM  600
PLSCFTNYPT LFPLVLRFVK QLRPKVVVTL DRNCDQLDAP FSTNIVHALH CYSALLESLD  660
AVNVNLDVLQ KIEKHFILPA LKKTITCPLR SQEKLPTWRN MFLQYGFSPF TFSNFTEAQA  720
ECLVQKAPVR GFQLERKHSS LVLCWQRKEL ITVSTWRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-36	408	756	27	378	Protein SCARECROW
5b3h_A	4e-36	408	756	26	377	Protein SCARECROW
5b3h_D	4e-36	408	756	26	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0183s00080.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017442479.1	0.0	PREDICTED: scarecrow-like protein 6
Refseq	XP_017442480.1	0.0	PREDICTED: scarecrow-like protein 6
TrEMBL	A0A0S3SXZ0	0.0	A0A0S3SXZ0_PHAAN; Uncharacterized protein
STRING	XP_007134751.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3183	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-116	GRAS family protein