PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0182s00740.1

Common Name

LR48_Vigan05g211700

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HD-ZIP

Protein Properties

Length: 646aa MW: 72193.8 Da PI: 7.6459

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0182s00740.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.6	1.6e-16	8	47	17	56
HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k Vang0182s00740.1 8 RLFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 47 79**********************************9877 PP
2	START	225.1	2.2e-70	163	384	4	206
HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 ++a++el+k+a+ +ep+W +s e++n+de++++f+ +++ +s+ea+r++gvv+ +l++lv+++ld++ qW+e+++ ka+t+ Vang0182s00740.1 163 NQALEELIKMATMGEPLWLRSFetgrEILNYDEYVKEFAVENSssgkpkRSIEASRDTGVVFVDLPRLVQSFLDVN-QWKEMFPclisKAATV 254 67999**************99***********9888899***************************.************ PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168 +vi++g ga+qlm+aelq+l+p+vp R+++fvR+++ql+a++w+ivdvS+d +++ ++s+v+++++pSg++ie+ksngh+kv+wve Vang0182s00740.1 255 DVICNGegpnrnGAVQLMFAELQMLTPMVPtREVYFVRFCKQLSAEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVIWVE 346 ********************************************************98.9************************* PP -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 h +++++ +h+l+r +v+sgla+ga++w tlq qce+ Vang0182s00740.1 347 HLECQKSAVHSLYRTIVNSGLAFGARHWITTLQLQCER 384 **********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.046	1	49	IPR001356	Homeobox domain
SMART	SM00389	3.3E-6	4	53	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.18E-13	7	54	IPR009057	Homeodomain-like
CDD	cd00086	9.27E-13	8	47	No hit	No description
Pfam	PF00046	7.5E-14	8	47	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.6E-14	8	57	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	24	47	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	38.57	151	387	IPR002913	START domain
SuperFamily	SSF55961	9.61E-32	154	384	No hit	No description
CDD	cd08875	2.47E-111	156	383	No hit	No description
SMART	SM00234	3.3E-70	160	384	IPR002913	START domain
Pfam	PF01852	1.1E-55	163	384	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	3.3E-4	210	379	IPR023393	START-like domain
SuperFamily	SSF55961	1.37E-14	406	606	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009957	Biological Process	epidermal cell fate specification
GO:0010062	Biological Process	negative regulation of trichoblast fate specification
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 646 aa Download sequence Send to blast
MNVMLFYRLF KESPHPDEKQ RQQLSKQLGL APRQVKFWFQ NRRTQIKAIQ ERHENSLLKS 60 EIEKLKEKNK TLRETINKAC CPTCGVPTTS RDGAMPTEEQ QLRIENAKLK AEVEKLRAAL 120 GKYAPGSTSP SCSSGHDQEN RSSLDFYTGI FGIDNSRIMD IVNQALEELI KMATMGEPLW 180 LRSFETGREI LNYDEYVKEF AVENSSSGKP KRSIEASRDT GVVFVDLPRL VQSFLDVNQW 240 KEMFPCLISK AATVDVICNG EGPNRNGAVQ LMFAELQMLT PMVPTREVYF VRFCKQLSAE 300 QWAIVDVSID KVEDNIDASL VKCRKRPSGC IIEDKSNGHC KVIWVEHLEC QKSAVHSLYR 360 TIVNSGLAFG ARHWITTLQL QCERLVFFMA TNVPMKDSTG VATLAGRKSI LKLAQRMTWS 420 FCHAIGASSF HTWTKVTSKN GEDIRISSRK NLNDPGEPLG LILCAVCSVW LPVSQNVLFD 480 FLRDETRRSE WDIMSSGGTV LSIANLSKGQ DRGNAVTIQT IKLKENSVWI LQDSCTNPYE 540 SMVVYASVDI TGIQSVMTGC DSSNLAILPS GFSIIPDGLE SRPLVITSRQ EEKYTEGGSL 600 FTMAFQILTN ASPTAKLTVE AVDSVNTLVS CTLRNIRTCL QCEEG*

Sequence ? help Back to Top

Protein Sequence Length: 646 aa Download sequence Send to blast

MNVMLFYRLF KESPHPDEKQ RQQLSKQLGL APRQVKFWFQ NRRTQIKAIQ ERHENSLLKS  60
EIEKLKEKNK TLRETINKAC CPTCGVPTTS RDGAMPTEEQ QLRIENAKLK AEVEKLRAAL  120
GKYAPGSTSP SCSSGHDQEN RSSLDFYTGI FGIDNSRIMD IVNQALEELI KMATMGEPLW  180
LRSFETGREI LNYDEYVKEF AVENSSSGKP KRSIEASRDT GVVFVDLPRL VQSFLDVNQW  240
KEMFPCLISK AATVDVICNG EGPNRNGAVQ LMFAELQMLT PMVPTREVYF VRFCKQLSAE  300
QWAIVDVSID KVEDNIDASL VKCRKRPSGC IIEDKSNGHC KVIWVEHLEC QKSAVHSLYR  360
TIVNSGLAFG ARHWITTLQL QCERLVFFMA TNVPMKDSTG VATLAGRKSI LKLAQRMTWS  420
FCHAIGASSF HTWTKVTSKN GEDIRISSRK NLNDPGEPLG LILCAVCSVW LPVSQNVLFD  480
FLRDETRRSE WDIMSSGGTV LSIANLSKGQ DRGNAVTIQT IKLKENSVWI LQDSCTNPYE  540
SMVVYASVDI TGIQSVMTGC DSSNLAILPS GFSIIPDGLE SRPLVITSRQ EEKYTEGGSL  600
FTMAFQILTN ASPTAKLTVE AVDSVNTLVS CTLRNIRTCL QCEEG*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269\|PubMed:11844112}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0182s00740.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by GEM. {ECO:0000269\|PubMed:17450124}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031171	0.0	KT031171.1 Glycine max clone HN_CCL_120 homeodomain/HOMEOBOX transcription factor (Glyma13g43350.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017425661.1	0.0	PREDICTED: homeobox-leucine zipper protein GLABRA 2-like
Swissprot	P46607	0.0	HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBL	A0A0L9UPL7	0.0	A0A0L9UPL7_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SFS9	0.0	A0A0S3SFS9_PHAAN; Uncharacterized protein
STRING	XP_007150635.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4714	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024] Wu R,Citovsky V Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development. Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553 [PMID:28526410]