PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0182s00710.1
Common NameLR48_Vigan05g211200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 289aa    MW: 32063.7 Da    PI: 5.3762
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0182s00710.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.66.1e-051862251155
                       HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        R +++ +++ +L +l+ +      +K + a++L +A+ YI+ Lq
  Vang0182s00710.1 186 VRKEKLSDRITTLHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 225
                       5788999**********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.03175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-10185236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-7185235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.15E-7185229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MMTGFPNWWS MHPPSLIPPQ YLLPPSSISF NFFTENPDPP QSWTQLLSTG LPGEEEKLGF  60
IDFQQKKLEN WDVQILNTAS GVSNNFDEIK QETSQRGTLY EHEHEEFQAS GPADSSWSHM  120
VPVSSSGSSC VTSISGNNIF DFSYNKSDHS KNLLRDQISE CNSTATVGVC KKARVQSSSS  180
QAPIKVRKEK LSDRITTLHQ LVSPFGKTDT ASVLLEAIGY IRFLQGQIEA LSSPYLEDAS  240
KNTRNQQSEA EDKAKELKSR GLCLVPVSCT QDVVSQNDWG TRIYGRGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0182s00710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017424475.10.0PREDICTED: transcription factor bHLH68-like
TrEMBLA0A0L9UPL10.0A0A0L9UPL1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SFI50.0A0A0S3SFI5_PHAAN; Uncharacterized protein
STRINGXP_007150642.11e-163(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.12e-39bHLH family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]