PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0176s00100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 297aa MW: 33852.8 Da PI: 9.8375 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.8 | 0.0015 | 130 | 152 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C ++++++ +L H + H Vang0176s00100.1 130 SCSVCFRVYPTSRLLSIHVSEvH 152 6*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.28 | 102 | 127 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 104 | 127 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 6.8 | 129 | 152 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 131 | 152 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 7 | 176 | 201 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 178 | 201 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MTQKYGPHSE VSIQFKIESG KRIPCVIEVK SVKMAMEVEN NHNQQLGFPF WKPIRRKFGP 60 DSPFFAPGNL ERELLAKQVA LELTEEKEQL EKWMQEEEGR EIFCPIVGCG ARLTSMDDFE 120 NHYNARHTAS CSVCFRVYPT SRLLSIHVSE VHDSFFQAKV ARGYDMVFGY LLPSSYECLV 180 EKCGLKFKSY NRRHQHLVDK HKFPTSFEFF KKAKPSKKQR LKSQQKKAVP KEKDAGMMEV 240 ENATVDDLVS AVSKLSTSDS TPSNISFGRR SKGLSFVPRT VQRRDQSNPA ASGTKR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0176s00100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017417077.1 | 0.0 | PREDICTED: zinc finger protein 511 | ||||
TrEMBL | A0A0S3RW22 | 0.0 | A0A0S3RW22_PHAAN; Uncharacterized protein | ||||
STRING | XP_007161722.1 | 1e-174 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9718 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14140.1 | 1e-99 | zinc ion binding;nucleic acid binding;zinc ion binding |