PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0173s00120.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SBP
Protein Properties Length: 439aa    MW: 48294.3 Da    PI: 7.7607
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0173s00120.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.89.6e-41114190278
                       -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       C v+gC++dls++++yhrrhkvCe hsk+p+v++ gl+qrfCqqCsrfh+l++fDe+krsCr+rL++hn+rrrk+q+
  Vang0173s00120.2 114 CLVDGCNSDLSNCRDYHRRHKVCELHSKSPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQP 190
                       **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114131.701111188IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.104.3E-32111175IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.01E-37112193IPR004333Transcription factor, SBP-box
PfamPF031103.3E-30114187IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MKCNHWSVKE ELSILLLLLS ATATPSWDLV DVDKASIPNI DSMEEHNRFG VYRMEGEFSV  60
DLKLGHVGNS GTESALSKFK DVAAGAGVSK VASSPSGSSK RARAINSTTL TVSCLVDGCN  120
SDLSNCRDYH RRHKVCELHS KSPEVTIGGL KQRFCQQCSR FHSLEQFDER KRSCRKRLDG  180
HNRRRRKPQP EPHTRPGSFL SNYQGKLCGC SCCSNTTLSE WTHVHICVDF MQIKYKSCEI  240
QDFSGTQLLP FSNPHVYPST AMMSTPWSGG LVTSAADARL HNQHHHQELF LGSSHKEGKQ  300
VAFLHGNHSN QSLPFPSPSV CHTLLRSSPL SESCGARSKM FCESLTTTNS VHDTPCALSL  360
LSSSQTHTPG NGLNQMVQAP SMSLMQPLGL SLQDNTNLES VERVLVPNGS DHCSSMYSLG  420
SDGSHCNEAP QLFPFQWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-271141871184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169186RKRSCRKRLDGHNRRRRK
2169187RKRSCRKRLDGHNRRRRKP
3170187KRSCRKRLDGHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0173s00120.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017419905.10.0PREDICTED: squamosa promoter-binding-like protein 13A isoform X1
TrEMBLA0A0S3RG280.0A0A0S3RG28_PHAAN; Uncharacterized protein
STRINGXP_007137898.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-62SBP family protein