PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0164s00380.1
Common NameLR48_Vigan03g189800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 392aa    MW: 44309.5 Da    PI: 7.0071
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0164s00380.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM186.17.8e-58271541129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdee++++yL++kv+++++++  +i e+d++k+ePwdLpk++k +ekewyfF+++d+ky+tg r+nrat+sgyWkatgkdke++
  Vang0164s00380.1  27 LPPGFRFHPTDEEIITHYLTEKVKDSSFSA-IAIGEADLNKCEPWDLPKRAKIGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIY 118
                       79*************************999.88***************99999**************************************** PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       + kg+lvg+kktLvfy+grapkgekt+Wvmhe+rle
  Vang0164s00380.1 119 KGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLE 154
                       *********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-6224179IPR003441NAC domain
PROSITE profilePS5100558.48627178IPR003441NAC domain
PfamPF023651.3E-2928153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MGDANSHIFD FMEEPIVLNK GEEPLDLPPG FRFHPTDEEI ITHYLTEKVK DSSFSAIAIG  60
EADLNKCEPW DLPKRAKIGE KEWYFFCQKD RKYPTGMRTN RATESGYWKA TGKDKEIYKG  120
KGNLVGMKKT LVFYRGRAPK GEKTNWVMHE FRLEGKFASY NLPKAAKDEW VVSRVFHKNT  180
DVKKSSIPGL LRINSIGDDL LDYSSLPPLM DPPYGNTNTT NPLSSTKSQS EGYYLPSFSI  240
NNHHQLLIKP EDHHRSYEIP TISYTSNQAN LSNTVNPIGS NALSQPSNMF SDYYVHQNRI  300
RSSIMPSIEG SGFGTNHDQA ILRAFAAKNN EHLGGILEKQ CKMEQFSSNH SQDTGLSNDR  360
NTETSSVVSK QDNMGRNRTL YEDLEGLFDV N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-522518415171NO APICAL MERISTEM PROTEIN
1ut4_B4e-522518415171NO APICAL MERISTEM PROTEIN
1ut7_A4e-522518415171NO APICAL MERISTEM PROTEIN
1ut7_B4e-522518415171NO APICAL MERISTEM PROTEIN
3swm_A5e-522518418174NAC domain-containing protein 19
3swm_B5e-522518418174NAC domain-containing protein 19
3swm_C5e-522518418174NAC domain-containing protein 19
3swm_D5e-522518418174NAC domain-containing protein 19
3swp_A5e-522518418174NAC domain-containing protein 19
3swp_B5e-522518418174NAC domain-containing protein 19
3swp_C5e-522518418174NAC domain-containing protein 19
3swp_D5e-522518418174NAC domain-containing protein 19
4dul_A4e-522518415171NAC domain-containing protein 19
4dul_B4e-522518415171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0164s00380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416919.10.0PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FK441e-111NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A0L9U6Y80.0A0A0L9U6Y8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RWF80.0A0A0S3RWF8_PHAAN; Uncharacterized protein
STRINGXP_007161814.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.11e-105Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]