PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0164s00290.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 367aa    MW: 41262.6 Da    PI: 8.8334
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0164s00290.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.36e-5381391128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeel+ +yL k+v++ +l++ ++i+evdiyk++PwdLp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++
  Vang0164s00290.1   8 LPPGFRFHPTDEELILHYLSKRVASIPLPV-SIIAEVDIYKLDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIV 99 
                       79****************************.89***************988899*************************************** PP

               NAM  94 sk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++      +e++g+kk Lvfykgr pkg+kt+W+mheyrl
  Vang0164s00290.1 100 TSlqggsVQENIGVKKALVFYKGRPPKGVKTNWIMHEYRL 139
                       *9987766667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-644166IPR003441NAC domain
PROSITE profilePS5100561.7458166IPR003441NAC domain
PfamPF023653.3E-279139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGSPQSNLPP GFRFHPTDEE LILHYLSKRV ASIPLPVSII AEVDIYKLDP WDLPAKATFG  60
EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKTIVT SLQGGSVQEN IGVKKALVFY  120
KGRPPKGVKT NWIMHEYRLV DNNKPIKLKD SSMRLDDWVL CRIYKKSKHA LTSTEAGIGV  180
GEVDQAEEQQ FNETLLPILK SPIPPPQNTL MSQKSVSFSN LLDAMDYSVL SSFLSENHSN  240
PPGIGSSAGF NTENLEQQSS PMNNPNNSYT FQKNTQLNPS LSNMENMRPK RQFSSIDDET  300
LYPSKKYLTS SCNFPSHINP QYENPQWNYL VKQSLLNQRI AGYEFSFVLG ILSFSISVSS  360
TVELHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-74517014169NO APICAL MERISTEM PROTEIN
1ut4_B9e-74517014169NO APICAL MERISTEM PROTEIN
1ut7_A9e-74517014169NO APICAL MERISTEM PROTEIN
1ut7_B9e-74517014169NO APICAL MERISTEM PROTEIN
4dul_A9e-74517014169NAC domain-containing protein 19
4dul_B9e-74517014169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0164s00290.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4403540.0EU440354.1 Glycine max transcriptional factor NAC11 (NAC11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017419507.10.0PREDICTED: NAC transcription factor 29-like
SwissprotQ84TD61e-103NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A0L9U6U30.0A0A0L9U6U3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RWD20.0A0A0S3RWD2_PHAAN; Uncharacterized protein
STRINGXP_007161811.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66212750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-101NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]