PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0162s00360.2
Common NameLR48_Vigan11g042700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 329aa    MW: 34698.4 Da    PI: 10.6084
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0162s00360.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.58.1e-3759155289
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 
                       + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++  +++ +  + ++s +     
  Vang0162s00360.2  59 PQKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsVNGTLKIPTTSPSDPelgdp 151
                       57999***********************************************************88888444222222222222222222222 PP

               TCP  89 ...k 89 
                          k
  Vang0162s00360.2 152 pekK 155
                       2211 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.5E-3164164IPR005333Transcription factor, TCP
PROSITE profilePS5136927.14165119IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAGDSSGDVD LRLGEPKGPK LEPETEQGSA IRVMPVAVHV PSGMSMTVSK ALAQAQAQPQ  60
KRASTKDRHT KVEGRGRRIR MPATCAARIF QLTRELGHKS DGETIRWLLE HAEPAIIAAT  120
GTGTVPAIAM SVNGTLKIPT TSPSDPELGD PPEKKKRKRP ANSAYVDVND GAVSVPAGLA  180
SSNKQSSRTI TTTASTTTPI PQHTAIPLPQ GVVPVWAVPS NAVVPTAGAF FVVPQAASFQ  240
HHPQFFTIAR PISAFVSSMV TPVQLQPTST SSSANANPSS TAPSSKSPAR ATVMAPTTTT  300
TTHMLRDFSL EIYDKQELQF MSRASSKH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152159EKKKRKRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00638PBMTransfer from Lj0g3v0004489Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0162s00360.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017441514.10.0PREDICTED: transcription factor TCP9
SwissprotO646472e-88TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A0L9VRK80.0A0A0L9VRK8_PHAAN; Uncharacterized protein
STRINGXP_007134948.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.12e-84TCP family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]