PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0162s00360.2 | ||||||||
Common Name | LR48_Vigan11g042700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | TCP | ||||||||
Protein Properties | Length: 329aa MW: 34698.4 Da PI: 10.6084 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.5 | 8.1e-37 | 59 | 155 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ +++ + + ++s + Vang0162s00360.2 59 PQKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsVNGTLKIPTTSPSDPelgdp 151 57999***********************************************************88888444222222222222222222222 PP TCP 89 ...k 89 k Vang0162s00360.2 152 pekK 155 2211 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.5E-31 | 64 | 164 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.141 | 65 | 119 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0048364 | Biological Process | root development | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MAGDSSGDVD LRLGEPKGPK LEPETEQGSA IRVMPVAVHV PSGMSMTVSK ALAQAQAQPQ 60 KRASTKDRHT KVEGRGRRIR MPATCAARIF QLTRELGHKS DGETIRWLLE HAEPAIIAAT 120 GTGTVPAIAM SVNGTLKIPT TSPSDPELGD PPEKKKRKRP ANSAYVDVND GAVSVPAGLA 180 SSNKQSSRTI TTTASTTTPI PQHTAIPLPQ GVVPVWAVPS NAVVPTAGAF FVVPQAASFQ 240 HHPQFFTIAR PISAFVSSMV TPVQLQPTST SSSANANPSS TAPSSKSPAR ATVMAPTTTT 300 TTHMLRDFSL EIYDKQELQF MSRASSKH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 159 | EKKKRKRP |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00638 | PBM | Transfer from Lj0g3v0004489 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0162s00360.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017441514.1 | 0.0 | PREDICTED: transcription factor TCP9 | ||||
Swissprot | O64647 | 2e-88 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | A0A0L9VRK8 | 0.0 | A0A0L9VRK8_PHAAN; Uncharacterized protein | ||||
STRING | XP_007134948.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2118 | 30 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 2e-84 | TCP family protein |
Publications ? help Back to Top | |||
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