PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0162s00120.1 | ||||||||
Common Name | LR48_Vigan11g040600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 336aa MW: 36540.5 Da PI: 8.0393 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.5 | 9.1e-20 | 49 | 99 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d s ++ r +lg+++t+eeAa+a+++a+++l+ge Vang0162s00120.1 49 RFIGVRQRP-SGRWVAEIKDSS---QHVRLWLGTYDTPEEAARAYDEAARALRGE 99 578******.7*********42...35**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.21E-30 | 49 | 106 | No hit | No description |
PROSITE profile | PS51032 | 20.363 | 49 | 106 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-28 | 49 | 106 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.3E-15 | 49 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-34 | 49 | 112 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.43E-20 | 50 | 106 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.6E-7 | 50 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-7 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MCRESNLQVQ EAHIIRAEAT KYGSTTSPTT TATTNMATRS SKPATMIRRF IGVRQRPSGR 60 WVAEIKDSSQ HVRLWLGTYD TPEEAARAYD EAARALRGEN ARTNFAPMNQ ATGQSGSNLL 120 TGDGKHGLSF ASLKAKLSKN LQNIMARASD HNKSSKSRVS DHFTFASIFH RRSYQIPEGD 180 MRNIEKVVQP SIIVPPVEGA VDYASAANWE SASTVSDCSS EWVGFGKLGL DQSDGSDIGE 240 FSVGDQGFLE QLMGWVESPD VTDQSECSRS KRFKVSSSVL VPPTFTASPY DCGSPYSGYA 300 SPYNGYFSPY NGYASPYNGC ASPCNGCVSP YYNKK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 49 | 105 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0162s00120.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014522489.1 | 0.0 | dehydration-responsive element-binding protein 2E-like | ||||
TrEMBL | A0A0L9VQY5 | 0.0 | A0A0L9VQY5_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SY03 | 0.0 | A0A0S3SY03_PHAAN; Uncharacterized protein | ||||
STRING | XP_007134987.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8324 | 31 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 5e-16 | related to AP2 11 |
Publications ? help Back to Top | |||
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