PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0162s00010.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HD-ZIP

Protein Properties

Length: 688aa MW: 75017.8 Da PI: 6.9806

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0162s00010.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.2	8.9e-16	4	44	16	56
HHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 16 eelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k Vang0162s00010.1 4 KKLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 44 589***********************************999 PP
2	START	206.5	1e-64	196	418	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 ela++a++elvk+a+ +ep+Wv+ + e+ n +e+ ++f++ + + +ea+r+ g+v+ ++ lve+l+d + +W e+++ + + Vang0162s00010.1 196 ELALAAMDELVKMAQTGEPLWVRNVeggrEIMNHEEYARTFTPCIGlrpngFVSEASRENGMVIINSLALVETLMDAN-RWAEMFPciiaRTS 287 5899***********************************99998****************************.********** PP EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS START 81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166 t+evis+g galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+ + + p s +v +++lpSg+++++++ng+skvtw Vang0162s00010.1 288 TTEVISNGingsrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIRESSGAP--STFVNCRRLPSGCVVQDMPNGYSKVTW 378 **********************************************************99..5********************** PP EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 veh++++++++h+++r+ ++sg+ +ga++wvatlqrqce+ Vang0162s00010.1 379 VEHAEYDESQIHQVYRPSLNSGMGFGAQRWVATLQRQCEC 418 ************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.236	1	46	IPR001356	Homeobox domain
SMART	SM00389	1.0E-4	1	50	IPR001356	Homeobox domain
Pfam	PF00046	3.1E-13	4	44	IPR001356	Homeobox domain
CDD	cd00086	8.66E-13	4	46	No hit	No description
SuperFamily	SSF46689	6.84E-13	4	50	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.2E-14	5	53	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	21	44	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	44.034	187	421	IPR002913	START domain
SuperFamily	SSF55961	3.92E-34	188	418	No hit	No description
CDD	cd08875	2.95E-122	191	417	No hit	No description
Pfam	PF01852	2.8E-56	196	418	IPR002913	START domain
SMART	SM00234	7.4E-48	196	418	IPR002913	START domain
SuperFamily	SSF55961	2.35E-24	445	680	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence Send to blast
MLKKKLFKEC PHPDEKQRLE LSKRLCLETR QVKFWFQNRR TQMKTQLERH ENTLLRQEND 60 KLRAENMSIR DAMRNPMCSN CGGPAIIGEI SLEEQHLRIE NARLKDELDR VCALTGKFLG 120 RPVSSLPNSS LELGVGGNGF GGMSIGTTLP LGQDFGMGMS MSVSNNPLAM VSPTSTRPTS 180 VVGGFDRSME RSMFLELALA AMDELVKMAQ TGEPLWVRNV EGGREIMNHE EYARTFTPCI 240 GLRPNGFVSE ASRENGMVII NSLALVETLM DANRWAEMFP CIIARTSTTE VISNGINGSR 300 NGALQLMHAE LQVLSPLVPV REVNFLRFCK QHAEGVWAVV DVSIRESSGA PSTFVNCRRL 360 PSGCVVQDMP NGYSKVTWVE HAEYDESQIH QVYRPSLNSG MGFGAQRWVA TLQRQCECLA 420 ILMSSAAPSR DHSAITAGGR RSMVKLAQRM TNNFCAGVCA STVHKWNKLN PGNVDEDVRV 480 MTRKSVDDPG EPPGIVLSAA TSVWLPVSPQ RLFDFLRDER LRSEWDILSN GGPMQEMAHI 540 AKGQDHGNCV SLLRASAINS SQSSMLILQE TCIDEAGSLV VYAPVDIPAM HVVMNGGDSA 600 YVALLPSGFA IVPDGPGSRG SQNGPTAATN GGDNGVARVS GSLLTVAFQI LVNSLPTAKL 660 TVESVETVNN LISCTVQKIK AALHCES*

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence Send to blast

MLKKKLFKEC PHPDEKQRLE LSKRLCLETR QVKFWFQNRR TQMKTQLERH ENTLLRQEND  60
KLRAENMSIR DAMRNPMCSN CGGPAIIGEI SLEEQHLRIE NARLKDELDR VCALTGKFLG  120
RPVSSLPNSS LELGVGGNGF GGMSIGTTLP LGQDFGMGMS MSVSNNPLAM VSPTSTRPTS  180
VVGGFDRSME RSMFLELALA AMDELVKMAQ TGEPLWVRNV EGGREIMNHE EYARTFTPCI  240
GLRPNGFVSE ASRENGMVII NSLALVETLM DANRWAEMFP CIIARTSTTE VISNGINGSR  300
NGALQLMHAE LQVLSPLVPV REVNFLRFCK QHAEGVWAVV DVSIRESSGA PSTFVNCRRL  360
PSGCVVQDMP NGYSKVTWVE HAEYDESQIH QVYRPSLNSG MGFGAQRWVA TLQRQCECLA  420
ILMSSAAPSR DHSAITAGGR RSMVKLAQRM TNNFCAGVCA STVHKWNKLN PGNVDEDVRV  480
MTRKSVDDPG EPPGIVLSAA TSVWLPVSPQ RLFDFLRDER LRSEWDILSN GGPMQEMAHI  540
AKGQDHGNCV SLLRASAINS SQSSMLILQE TCIDEAGSLV VYAPVDIPAM HVVMNGGDSA  600
YVALLPSGFA IVPDGPGSRG SQNGPTAATN GGDNGVARVS GSLLTVAFQI LVNSLPTAKL  660
TVESVETVNN LISCTVQKIK AALHCES*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0162s00010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017442222.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
Refseq	XP_017442223.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
Refseq	XP_017442224.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
Refseq	XP_017442225.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X2
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A0S3SYC6	0.0	A0A0S3SYC6_PHAAN; Uncharacterized protein
STRING	XP_007134961.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1192	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]