PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0155s00240.1
Common NameLR48_Vigan08g094400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 262aa    MW: 29066.1 Da    PI: 6.2635
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0155s00240.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.8e-1375121354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++h+e+ErrRR+riN  +++Lr+++P a      K++Ka+ L ++++++k+L
  Vang0155s00240.1  75 KNHSEAERRRRARINAHLDTLRSVIPGA-----MKMDKASLLGEVIRHLKEL 121
                       58*************************9.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.10172121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-1175121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-1475123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1375125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-1378127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.12E-585123No hitNo description
CDDcd048732.99E-7160231No hitNo description
Gene3DG3DSA:3.30.70.2603.2E-5160202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEIMEMEEFL WGGDIDGDVP KGNSDGFEGS SGMIGSGCGS SFSLVLDRER GELVEAPVKL  60
ERKGVSTERT TEALKNHSEA ERRRRARINA HLDTLRSVIP GAMKMDKASL LGEVIRHLKE  120
LKRNAAQACE GLMIPKDNDE ISVEEQEGGL NGFPYSIRAS LCCEYKPGLL SDIRQALDSL  180
HLMITRADIA TLEGRMKNVF VIISCKEHNF EDASYRQFLA GSVHQALRSV LNRFSVSQDI  240
LGTRKRRRIS IFSSSSLEDF L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243247RKRRR
2244248KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0155s00240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017432531.10.0PREDICTED: transcription factor bHLH30-like
TrEMBLA0A0L9V5970.0A0A0L9V597_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SB000.0A0A0S3SB00_PHAAN; Uncharacterized protein
STRINGGLYMA12G14400.11e-173(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106852538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.18e-29basic helix-loop-helix 32
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]