PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0155s00200.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 393aa    MW: 43403.9 Da    PI: 7.0148
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0155s00200.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.91.1e-35982042110
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssas 83 
                       +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak +i++l+++           +              +++
  Vang0155s00200.1  98 TGRKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELppwhppiheekQ--------------NDA 176
                       79**************************************************************544433333321..............222 PP

               TCP  84 nsssg.kaaksaakskksqksaasalnl 110
                       + ssg  a ++++++ ++q+s+++  n+
  Vang0155s00200.1 177 AGSSGiMAVEQQQEEPHQQQSESCGYNF 204
                       2222222222222333333333333443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.3E-3298196IPR005333Transcription factor, TCP
PROSITE profilePS5136932.112100158IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MHAACLTMGL NEHSGRIVTI QSLWVAAADE GLQATIVKGN SKQSKVCIGR SSHGIEPSTL  60
DQAIKHRKHN REGTFTRVMR SSVGDIVQVE GGHIVRSTGR KDRHSKVYTS KGPRDRRVRL  120
SAHTAIEFYD VQDRLGYDRP SKAVDWLIKK AKSSIDKLAE LPPWHPPIHE EKQNDAAGSS  180
GIMAVEQQQE EPHQQQSESC GYNFQLHRQL GAFISTHVDT DPINFQTNNN SEDLGLSLHC  240
FQDHPGLINW PSQQGANQAP PSNEHQIQTL FAGSTPVSFE NHYQRTVTWN NEATTGDHVS  300
RMGFFLNSQP FIGQGSASAY AQSETLQSSF SFPMTSSEHQ RPQPVHQPSI FGSRFAVSDG  360
LTGFCIPDRI QDVEENHGDA SNRPSSSPSS IH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-21105158154Putative transcription factor PCF6
5zkt_B1e-21105158154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0155s00200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017432329.10.0PREDICTED: transcription factor TCP4-like
RefseqXP_017432330.10.0PREDICTED: transcription factor TCP4-like
RefseqXP_017432331.10.0PREDICTED: transcription factor TCP4-like
TrEMBLA0A4D6LCG40.0A0A4D6LCG4_VIGUN; Transcription factor TCP subgroup
STRINGXP_007134584.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.39e-47TCP family protein