PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0155s00110.1

Common Name

LR48_Vigan08g092800

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bZIP

Protein Properties

Length: 210aa MW: 23566.5 Da PI: 9.6099

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0155s00110.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31	5.6e-10	85	120	13	48
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 13 NReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 NR +A+rsR RK+++i eLe+ v +L+ae + L + Vang0155s00110.1 85 NRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPR 120 ****************************98877655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.5E-7	76	137	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.11E-9	82	129	No hit	No description
CDD	cd14703	1.40E-19	82	128	No hit	No description
Pfam	PF00170	1.6E-7	84	121	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.0E-11	84	128	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MTPNWPDFSS PHQKMPSLKT MAPNVSNQNP SWVDEFLDFS AARRGAHRRS VSDSVAFLEA 60 PMLDHHCKSR GSDGGGDNES EILANRQSAQ RSRVRKLQYI SELERSVTSL QAEVSVLSPR 120 VAFLDHQRLL LNVDNSALKQ RIAALAQDKI FKDAHQEALK REIERLRQVY HQQNIKKMDN 180 AAGSTSQSPL PSPKPRCDTL TEKEQLINV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator. {ECO:0000269\|PubMed:17719007}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0155s00110.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	1e-132	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014524379.1	3e-83	basic leucine zipper 34
Refseq	XP_017431608.1	1e-83	PREDICTED: basic leucine zipper 61 isoform X3
Swissprot	Q9M2K4	1e-60	BZP61_ARATH; Basic leucine zipper 61
TrEMBL	A0A1S3W2J1	8e-82	A0A1S3W2J1_VIGRR; basic leucine zipper 34
STRING	Lus10039902	1e-83	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21578	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	4e-63	bZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]