PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0155s00110.1 | ||||||||
Common Name | LR48_Vigan08g092800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bZIP | ||||||||
Protein Properties | Length: 210aa MW: 23566.5 Da PI: 9.6099 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31 | 5.6e-10 | 85 | 120 | 13 | 48 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 13 NReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 NR +A+rsR RK+++i eLe+ v +L+ae + L + Vang0155s00110.1 85 NRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPR 120 ****************************98877655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.5E-7 | 76 | 137 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.11E-9 | 82 | 129 | No hit | No description |
CDD | cd14703 | 1.40E-19 | 82 | 128 | No hit | No description |
Pfam | PF00170 | 1.6E-7 | 84 | 121 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.0E-11 | 84 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MTPNWPDFSS PHQKMPSLKT MAPNVSNQNP SWVDEFLDFS AARRGAHRRS VSDSVAFLEA 60 PMLDHHCKSR GSDGGGDNES EILANRQSAQ RSRVRKLQYI SELERSVTSL QAEVSVLSPR 120 VAFLDHQRLL LNVDNSALKQ RIAALAQDKI FKDAHQEALK REIERLRQVY HQQNIKKMDN 180 AAGSTSQSPL PSPKPRCDTL TEKEQLINV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator. {ECO:0000269|PubMed:17719007}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0155s00110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 1e-132 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014524379.1 | 3e-83 | basic leucine zipper 34 | ||||
Refseq | XP_017431608.1 | 1e-83 | PREDICTED: basic leucine zipper 61 isoform X3 | ||||
Swissprot | Q9M2K4 | 1e-60 | BZP61_ARATH; Basic leucine zipper 61 | ||||
TrEMBL | A0A1S3W2J1 | 8e-82 | A0A1S3W2J1_VIGRR; basic leucine zipper 34 | ||||
STRING | Lus10039902 | 1e-83 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21578 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58120.1 | 4e-63 | bZIP family protein |
Publications ? help Back to Top | |||
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