PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0155s00070.1 | ||||||||
Common Name | LR48_Vigan08g092500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 175aa MW: 20492.3 Da PI: 9.1494 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116.6 | 1.5e-36 | 4 | 102 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaCk++r+kC+++C+lapyfp++++++f +vhk+FG+sn++kl+k+++e++r+++++sl++eA++r+rdP++G +g ++k+ ++++++ e Vang0155s00070.1 4 ACAACKHQRKKCSEKCILAPYFPSNRSREFHAVHKVFGVSNITKLVKNAREDDRRRVVDSLTWEACCRQRDPIHGPYGEYTKVFNEYKKVLDE 96 7*****************************************************************************************999 PP DUF260 94 lallke 99 l++ ++ Vang0155s00070.1 97 LKRFRS 102 998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.82 | 3 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-34 | 4 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MHPACAACKH QRKKCSEKCI LAPYFPSNRS REFHAVHKVF GVSNITKLVK NAREDDRRRV 60 VDSLTWEACC RQRDPIHGPY GEYTKVFNEY KKVLDELKRF RSQHQMLQFP SLGFKSVQDK 120 AEEDYLHGKK NAIIDSDIYN SYSSNYLQEF QNLRPEVLIP FHHHSQPYYI TGIL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-19 | 5 | 97 | 12 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-19 | 5 | 97 | 12 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | Transfer from AT1G06280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0155s00070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014524391.2 | 1e-123 | LOB domain-containing protein 2 | ||||
Swissprot | Q9LNB9 | 6e-38 | LBD2_ARATH; LOB domain-containing protein 2 | ||||
TrEMBL | A0A0L9V574 | 1e-129 | A0A0L9V574_PHAAN; Uncharacterized protein | ||||
STRING | XP_007132691.1 | 1e-111 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12722 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 3e-40 | LOB domain-containing protein 2 |
Publications ? help Back to Top | |||
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