PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0145s00670.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bZIP | ||||||||
Protein Properties | Length: 338aa MW: 37246.3 Da PI: 7.4326 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 26.2 | 1.7e-08 | 156 | 204 | 3 | 51 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 e k +r N+eA r++R++Kka+ + Le++v +L a N+ L k+l++ Vang0145s00670.3 156 EKKSKKRPLGNKEAVRKYREKKKARAASLEDEVVKLRALNQHLMKKLQN 204 5688899999**********************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 6.9E-13 | 152 | 222 | No hit | No description |
SMART | SM00338 | 7.7E-10 | 154 | 221 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 1.1E-11 | 156 | 211 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.864 | 156 | 203 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.19E-6 | 158 | 205 | No hit | No description |
CDD | cd14686 | 8.11E-10 | 160 | 213 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071294 | Biological Process | cellular response to zinc ion | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
YDIYEPLISE RVFGKRVVLR IRIYSGKRVI GINLNPLKLK REKIDKEKVE GRICEAIVSF 60 WSDLGISVQM DDGELDFSTQ EVFSSPNMGE LPSSGSMDSF FEELLKDTHA CTHTHTCNPP 120 GPDFSHTHTC YHVHTKIVPA PDEDQVATDD TAESAEKKSK KRPLGNKEAV RKYREKKKAR 180 AASLEDEVVK LRALNQHLMK KLQNQAALEA EIARLKCLLV DIRGRIEGEI GSFPYQKSPN 240 ANPPVVNLPG SYVMNPCNMQ CDDRVYCLHP GADGRIVENV SLNGEEFGGC EFENLQCLAN 300 QNLGLKELRA CGVGQAGSNV NSSASKRKGG SRAATAG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0145s00670.3 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017433082.1 | 0.0 | PREDICTED: basic leucine zipper 23-like | ||||
Refseq | XP_017433083.1 | 0.0 | PREDICTED: basic leucine zipper 23-like | ||||
Refseq | XP_017433084.1 | 0.0 | PREDICTED: basic leucine zipper 23-like | ||||
Swissprot | Q8GTS2 | 1e-111 | BZP23_ARATH; Basic leucine zipper 23 | ||||
TrEMBL | A0A4D6LJG2 | 0.0 | A0A4D6LJG2_VIGUN; Serine/threonine-protein kinase PBS1 | ||||
STRING | XP_007131714.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16770.1 | 9e-95 | bZIP family protein |
Publications ? help Back to Top | |||
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