PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0143s00050.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 142aa MW: 17026.3 Da PI: 9.5047

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0143s00050.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	118.9	4.9e-37	3	111	21	128
NAM 21 kkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfyk 110 kkv++++++l +vik+vd+yk++PwdL++ ++ + e++ewyfFs++d++y+tg+r+n t+ g+Wk+tg+d++++s k+ + ++ktLvfyk Vang0143s00050.1 3 KKVTSRRIHL-HVIKDVDLYKIDPWDLQElcRIGTeEQNEWYFFSHKDNNYPTGTRTNTPTAVGFWKKTGRDNAIYS-KHDFIRMRKTLVFYK 93 7899999999.89************954555442556**********************************.8889******* PP NAM 111 grapkgektdWvmheyrl 128 ++ap+g+k+dW+mheyrl Vang0143s00050.1 94 AQAPNGQKSDWIMHEYRL 111 **************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	35.477	1	141	IPR003441	NAC domain
SuperFamily	SSF101941	1.16E-35	3	117	IPR003441	NAC domain
Pfam	PF02365	1.8E-14	25	111	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MWKKVTSRRI HLHVIKDVDL YKIDPWDLQE LCRIGTEEQN EWYFFSHKDN NYPTGTRTNT 60 PTAVGFWKKT GRDNAIYSKH DFIRMRKTLV FYKAQAPNGQ KSDWIMHEYR LQTHVNDTPQ 120 ASFTNYYIHI TREKEDILLM I*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-32	1	111	33	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0143s00050.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009773837.1	1e-70	PREDICTED: NAC domain-containing protein 7-like
Swissprot	F4HYV5	8e-61	NAC26_ARATH; NAC domain-containing protein 26
TrEMBL	A0A4D6M5I7	2e-72	A0A4D6M5I7_VIGUN; Uncharacterized protein
STRING	XP_009773837.1	4e-70	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1269	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62700.1	3e-63	Arabidopsis NAC domain containing protein 26

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]