PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0134s00650.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 588aa    MW: 67347.3 Da    PI: 6.7411
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0134s00650.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.69.4e-30133218187
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                       rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Vang0134s00650.1 133 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 218
                       8*************************************999*****************************98..55667*******85 PP
2trihelix51.82.1e-16433515284
          trihelix   2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                       W+++e+  L ++r eme+r+ + g++++  Wee++ km+  g+ers+   kekwe+ +++ ++ k+g+kkr +e+s+ c yfd+
  Vang0134s00650.1 433 WPESEITRLQQLRAEMETRYMQsGCSEEFMWEEIATKMACFGYERSALVFKEKWESTSNYARNAKDGNKKR-KEDSRGCFYFDN 515
                       *******************98648**********************************************8.88899*****86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.131126191IPR017877Myb-like domain
PfamPF138371.5E-20133219No hitNo description
CDDcd122035.62E-20133198No hitNo description
PfamPF138374.3E-9431515No hitNo description
PROSITE profilePS500905.436432490IPR017877Myb-like domain
CDDcd122038.91E-15433497No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MEDHHHHHHQ HHEQQQQQQQ QYAITDLRQL MNGPRSTHFP SMPPQPKAEL FPGGHPNLAA  60
SQHFEMMMFG RQVADIMPRC LHDFASTDSA TNNNNTSIAA ATPTTTTSAS TPPLSCLEGE  120
TAGCIGGDAS TGRWPRQETL TLLEIRSRLD SKFKEANQKG PLWDEVSRIM SEEHGYQRSG  180
KKCREKFENL YKYYKKTKEG KAGRQDGKHY RFFRQLEALY GENSNQTSVP ETNFGSGSLR  240
FHSNSHNPSQ TNQEMFHSQK HCDSLSLTNT TDLDTSSSDD NDQNSTGGLK DNDSTEKRRK  300
RLSGRSWKVK IKDFIDSQMR KLVDKQEEWL DKLTKTLEQK EKERVLREEE WRRQEAVRLE  360
REHKFWAKER AWIEARDAAL MEALQKLTGN EMIKSTQSPE GVMVTGIQNH SENLNEDGSE  420
ILNSTTARGA ESWPESEITR LQQLRAEMET RYMQSGCSEE FMWEEIATKM ACFGYERSAL  480
VFKEKWESTS NYARNAKDGN KKRKEDSRGC FYFDNSEQSS LYNQGGAYCD INDQRHERRL  540
QNDGSSPSNS NVGNAVAGDH CFPFLMTESA NLWENYSLKV SKASQNQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0134s00650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418857.10.0PREDICTED: trihelix transcription factor PTL isoform X1
RefseqXP_017418858.10.0PREDICTED: trihelix transcription factor PTL isoform X2
TrEMBLA0A0S3RZ620.0A0A0S3RZ62_PHAAN; Uncharacterized protein
STRINGXP_007162858.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-130Trihelix family protein