PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0134s00140.1 | ||||||||
Common Name | LR48_Vigan641s006300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 232aa MW: 25379.2 Da PI: 6.887 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0011 | 57 | 79 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Vang0134s00140.1 57 YECKTCNRCFPSFQALGGHRASH 79 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 14.2 | 0.00013 | 136 | 158 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Vang0134s00140.1 136 HECSICGAEFSSGQALGGHMRRH 158 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.68E-9 | 56 | 79 | No hit | No description |
Pfam | PF13912 | 6.3E-11 | 56 | 80 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 57 | 79 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.265 | 57 | 79 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 59 | 79 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.68E-9 | 131 | 158 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.3E-4 | 134 | 158 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 6.2E-13 | 135 | 159 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.01 | 136 | 158 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.743 | 136 | 158 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 138 | 158 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MSTCSTADNS AAFEPPTTSN ELRNEEDEDL ANCLILLARG HSTPKPSHGK ESGLYVYECK 60 TCNRCFPSFQ ALGGHRASHK RFSKAGAEEK QVTTFGDNIS KNNHDDYCLT LQLSTVLYNS 120 SNSTRSSTVN AKSKVHECSI CGAEFSSGQA LGGHMRRHRN FLSSPSSGAI AYAGDRIPEI 180 PEIKKQKDVL NLDLNLPAPE DDHHRESNLL PFQSKEKVIV FSATSLVDCH Y* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00487 | DAP | Transfer from AT5G04390 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0134s00140.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017409990.1 | 1e-173 | PREDICTED: zinc finger protein ZAT5 | ||||
Swissprot | Q681X4 | 2e-49 | ZAT5_ARATH; Zinc finger protein ZAT5 | ||||
TrEMBL | A0A0L9TF82 | 1e-171 | A0A0L9TF82_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RZ15 | 1e-171 | A0A0S3RZ15_PHAAN; Uncharacterized protein | ||||
STRING | XP_007162794.1 | 1e-134 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 6e-51 | C2H2 family protein |
Publications ? help Back to Top | |||
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