PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0126s00030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 349aa    MW: 39427.3 Da    PI: 7.7133
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0126s00030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.92.3e-122352130
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHH CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvL 30
                      kr en+  rq t++kR+ngi+KKA ELS+ 
  Vang0126s00030.1 23 KRLENTNGRQATYAKRKNGIMKKAAELSIF 52
                      689*************************95 PP

2K-box151e-061001731784
             K-box  17 lqqelakLkkeienLq.....reqRhllGedLesL.slkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                       ++q+++ L ++ + Lq     + +R   + + +++ ++++L q+e+ L +sl++iR++K+++ + q+  lq  +
  Vang0126s00030.1 100 SSQNIEDLSNQARLLQsqiseTHKRLSCWTEFDKItNVEQLGQMENSLRESLNQIRTRKENIKKHQLASLQCNN 173
                       4566666666666666555534446668999999747999**************************99998655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-101564IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-131570IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.7731557IPR002100Transcription factor, MADS-box
CDDcd001209.44E-141651No hitNo description
PRINTSPR004042.1E-111737IPR002100Transcription factor, MADS-box
PfamPF003191.3E-82551IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-113752IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
LSFSLSTFEN VDKGMGRVKL KIKRLENTNG RQATYAKRKN GIMKKAAELS IFNLEEVIAK  60
FAQLTPQERA KRKLETLEAL KKTFKKLDHD VNIQEFLGTS SQNIEDLSNQ ARLLQSQISE  120
THKRLSCWTE FDKITNVEQL GQMENSLRES LNQIRTRKEN IKKHQLASLQ CNNQFNEMNI  180
PFRMSAEQHL QPLSWIANGD SQNIVLPEDS TMFLHKDVEG SASSSFGSYA SYLGSSMKNE  240
MSNSAQENGV LNELSSTANM RLQLNGQFPY LPYNFNLLNN LKFQPNAEMN PHENPVDYHV  300
NGSLEAPRSG FDSNHHAWAS TSGPCGVTMF DDQLYAQASS TKMHFGFT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0126s00030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017434783.10.0PREDICTED: agamous-like MADS-box protein AGL30
SwissprotQ1PFA42e-85AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A1S3ULL40.0A0A1S3ULL4_VIGRR; agamous-like MADS-box protein AGL30
STRINGXP_007158646.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.22e-75AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]