PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0126s00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 349aa MW: 39427.3 Da PI: 7.7133 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37.9 | 2.3e-12 | 23 | 52 | 1 | 30 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHH CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvL 30 kr en+ rq t++kR+ngi+KKA ELS+ Vang0126s00030.1 23 KRLENTNGRQATYAKRKNGIMKKAAELSIF 52 689*************************95 PP | |||||||
2 | K-box | 15 | 1e-06 | 100 | 173 | 17 | 84 |
K-box 17 lqqelakLkkeienLq.....reqRhllGedLesL.slkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 ++q+++ L ++ + Lq + +R + + +++ ++++L q+e+ L +sl++iR++K+++ + q+ lq + Vang0126s00030.1 100 SSQNIEDLSNQARLLQsqiseTHKRLSCWTEFDKItNVEQLGQMENSLRESLNQIRTRKENIKKHQLASLQCNN 173 4566666666666666555534446668999999747999**************************99998655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.6E-10 | 15 | 64 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.32E-13 | 15 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.773 | 15 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 9.44E-14 | 16 | 51 | No hit | No description |
PRINTS | PR00404 | 2.1E-11 | 17 | 37 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-8 | 25 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-11 | 37 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
LSFSLSTFEN VDKGMGRVKL KIKRLENTNG RQATYAKRKN GIMKKAAELS IFNLEEVIAK 60 FAQLTPQERA KRKLETLEAL KKTFKKLDHD VNIQEFLGTS SQNIEDLSNQ ARLLQSQISE 120 THKRLSCWTE FDKITNVEQL GQMENSLRES LNQIRTRKEN IKKHQLASLQ CNNQFNEMNI 180 PFRMSAEQHL QPLSWIANGD SQNIVLPEDS TMFLHKDVEG SASSSFGSYA SYLGSSMKNE 240 MSNSAQENGV LNELSSTANM RLQLNGQFPY LPYNFNLLNN LKFQPNAEMN PHENPVDYHV 300 NGSLEAPRSG FDSNHHAWAS TSGPCGVTMF DDQLYAQASS TKMHFGFT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0126s00030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017434783.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL30 | ||||
Swissprot | Q1PFA4 | 2e-85 | AGL30_ARATH; Agamous-like MADS-box protein AGL30 | ||||
TrEMBL | A0A1S3ULL4 | 0.0 | A0A1S3ULL4_VIGRR; agamous-like MADS-box protein AGL30 | ||||
STRING | XP_007158646.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2750 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 2e-75 | AGAMOUS-like 30 |
Publications ? help Back to Top | |||
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