PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0126s00010.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Dof

Protein Properties

Length: 499aa MW: 54342.7 Da PI: 6.7259

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0126s00010.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.3	1.9e-39	158	218	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk++s Vang0126s00010.1 158 PDNILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNTS 218 78899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-30	156	215	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.1E-32	160	216	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	162	216	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	164	200	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
TFPIFLEREG ASKQTKATTR ERDIPDPDPH HHFYISGMSE VKGSAIKLFG RTISLPHNDS 60 SAPPTLACPS SSSSPPEPTS ATQQHQEDQE AQRKQLTSLE DDDASSHETT EDLKSAASDV 120 LENPKTPSAE TETSLQKSPE NEEQSETSAS EEKTPKKPDN ILPCPRCNSM DTKFCYYNNY 180 NVNQPRHFCK NCQRYWTAGG TMRNVPVGAG RRKNKNTSAA AVSHYRQIMM PEAFQGATLN 240 ASNGLHNALF GNGAAVLTFG SDTPLCDTMS SVLNIAERAQ SCVSNGFHAT EPNGYFSYSK 300 EGDGGGHSTG VSVSTTSNSS HASSHESVDK RVEGFTPQLS YFPGAPWPYP MPPTFFQPRY 360 PLSFHTTPAY WSCMPPSWNI SCMSSQSSDS NTVSAPILGK HSRNGNIITP SNSQKEIHNS 420 SEHNFLIPKT LRIDDPGEAA KSSMWSKLGT KNDRTSSGGL FQAFPPKGND MNHRVEASPQ 480 LQANPAALSR SLTFHEQT*

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

TFPIFLEREG ASKQTKATTR ERDIPDPDPH HHFYISGMSE VKGSAIKLFG RTISLPHNDS  60
SAPPTLACPS SSSSPPEPTS ATQQHQEDQE AQRKQLTSLE DDDASSHETT EDLKSAASDV  120
LENPKTPSAE TETSLQKSPE NEEQSETSAS EEKTPKKPDN ILPCPRCNSM DTKFCYYNNY  180
NVNQPRHFCK NCQRYWTAGG TMRNVPVGAG RRKNKNTSAA AVSHYRQIMM PEAFQGATLN  240
ASNGLHNALF GNGAAVLTFG SDTPLCDTMS SVLNIAERAQ SCVSNGFHAT EPNGYFSYSK  300
EGDGGGHSTG VSVSTTSNSS HASSHESVDK RVEGFTPQLS YFPGAPWPYP MPPTFFQPRY  360
PLSFHTTPAY WSCMPPSWNI SCMSSQSSDS NTVSAPILGK HSRNGNIITP SNSQKEIHNS  420
SEHNFLIPKT LRIDDPGEAA KSSMWSKLGT KNDRTSSGGL FQAFPPKGND MNHRVEASPQ  480
LQANPAALSR SLTFHEQT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0126s00010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017411437.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	A0A0L9TN95	0.0	A0A0L9TN95_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3R1Q2	0.0	A0A0S3R1Q2_PHAAN; Uncharacterized protein
STRING	XP_007158648.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-80	cycling DOF factor 2