PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0121s00750.1
Common NameLR48_Vigan03g259200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 350aa    MW: 39220 Da    PI: 8.7326
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0121s00750.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309e-10264305955
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        ++RR+ri +++  L+el+P+       K++ +++LekA+ Y+k Lq
  Vang0121s00750.1 264 AKNRRERISERLKILQELVPNG-----SKVDMVTMLEKAISYVKFLQ 305
                       69*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-12254313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-14254315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.408255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.54E-11257309No hitNo description
SMARTSM003535.2E-12261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-7265305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
LTNLNQPSFT SLMALAKDQN IPHDSTMSTK VPNCVFSEAV ETTSVTVHRV NEYHKSVIEE  60
ENGSQTTNGL SNDSGITHSP PLSGSGKGYT YKEKSYQLDE EESLIHFKGY SNLMQGGESL  120
LSFQHNRLVP NSCYSKDISQ KEYCVWENSL HQGHNHWNQH SPRSNKDMRL VQDFNCFQTA  180
SCYGSMVDNA KEKQYGERSS GWLYSASTIP NDKSLHNLAA REMVLQKRPS MGESMKAAKK  240
QCSTESKTLK HKSSPSKDPQ SVAAKNRRER ISERLKILQE LVPNGSKVDM VTMLEKAISY  300
VKFLQLQVKV LATDELWPAQ GGKPPDISQV KEVIDAIRSS QRERSLNSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0121s00750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416781.10.0PREDICTED: putative transcription factor bHLH086
TrEMBLA0A0L9U8Q20.0A0A0L9U8Q2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RZM80.0A0A0S3RZM8_PHAAN; Uncharacterized protein
STRINGXP_007163398.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49373253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.13e-64RHD SIX-LIKE 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]