PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0121s00340.1

Common Name

LR48_Vigan03g255900

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 263aa MW: 29348 Da PI: 8.8569

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0121s00340.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H Vang0121s00340.1 63 YSCNFCKREFRSAQALGGHMNVH 85 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.96E-6	60	89	No hit	No description
PROSITE profile	PS50157	11.219	63	90	IPR007087	Zinc finger, C2H2
Pfam	PF13912	7.2E-6	63	86	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0072	63	85	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	65	85	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
LPLINMEDSQ YLLWFKRKQI LNSHIQQPFG ARITNTNSSW EERAFAEDAA RILGGCIWPP 60 RSYSCNFCKR EFRSAQALGG HMNVHRRDRA RLKQSLGHPN ESLQHLHKND CSAAASKASS 120 SRPSTISTQE NCYHQPTMSP YSPSFSWGHH HMGSSDSEPK GSAVNGREQF LKGSGCNDYV 180 ETSLSVGQSS VFGQKLPIES YGDEAISYKR SKTSMPPLPV FHKPCSSDRH LTFHSAEFVL 240 GLKPGMEDLD LELRLGKPQK VI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	1e-12	58	85	2	29	superman protein
2l1o_A	1e-12	58	85	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0121s00340.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017416776.1	0.0	PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBL	A0A0L9U9A6	0.0	A0A0L9U9A6_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RZJ3	0.0	A0A0S3RZJ3_PHAAN; Uncharacterized protein
STRING	XP_007163443.1	1e-175	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1776	30	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37740.1	3e-27	zinc-finger protein 10

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]