PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0114s00450.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 73aa    MW: 8649.08 Da    PI: 10.7531
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0114s00450.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.43.4e-171493887
          trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                      mr+ g++r+ k+Ckekw+n+nk++kk+ke++k+r  ++s+ cpyf+ql+a
  Vang0114s00450.1  1 MRKLGYNRNTKRCKEKWDNINKYFKKVKESNKRR-LKDSKMCPYFNQLDA 49
                      8999****************************98.67788********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-11150No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MRKLGYNRNT KRCKEKWDNI NKYFKKVKES NKRRLKDSKM CPYFNQLDAL YREKSKVEGV  60
ATTVKLESTV GR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0114s00450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-119AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017415094.13e-33PREDICTED: trihelix transcription factor GT-2-like isoform X1
RefseqXP_017415095.13e-33PREDICTED: trihelix transcription factor GT-2-like isoform X2
SwissprotQ391174e-25TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0S3SND87e-32A0A0S3SND8_PHAAN; Uncharacterized protein
STRINGXP_007143535.12e-30(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.14e-29Trihelix family protein