PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0110s00370.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 589aa    MW: 64436.4 Da    PI: 8.1418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0110s00370.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-1186132354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++h+e+ErrRR+riN  +++Lr l+P+      +K++Ka+ L ++++ +k+L
  Vang0110s00370.1  86 KNHSEAERRRRERINGHLATLRGLVPST-----EKMDKATLLAEVIKQVKEL 132
                       58*************************8.....8************998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.41583132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-986132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1287134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1287136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1189138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.25.10.104.8E-24213512IPR011989Armadillo-like helical
SuperFamilySSF483711.79E-26243497IPR016024Armadillo-type fold
CDDcd000204.14E-5268423No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
LQFKTFNIMV HSFYEKSSPS GSDISGLFNP TLQSVGASNG EVAKGGLSSS HSLVYESEKG  60
ELVKCSSAAK VGKNEICEAK ALAALKNHSE AERRRRERIN GHLATLRGLV PSTEKMDKAT  120
LLAEVIKQVK ELKKTAVEVS KGFPIPMDAD EVKVEPCDGS MSYSATICCD FRPEIISDLR  180
QTLDSLPLHL EKAEISTLAG RMKNVFVFTC CKGNIDIHTE ACQALARTVH QALCSVLEKA  240
SASLDWEEKD VAAKEIERLA KEYEKVRELA TELGVLRVLV SMALSDVASR RRVALKALIH  300
LSNGNHKNKA LIVEAGLLCK LPKKIDLEDE SIREFADLLS SLSSLGNIQF PHSSLDFLQF  360
LIDILKSCPS FDTKESCLVA MCNISTVLEN AGPLISNGVV PILLELCSEK GTSEKALTIL  420
GNLGVTLMGK KALENSSIVP KCLIEILSWE DEPKCQELST NILIILAHKN STQRSKMVQS  480
GIVPVLLQVA LLGSSSAQKR ARKLLRWFRD ESQIEMGPHL GPQSSRIAYV TLKNQRDTEE  540
GRRTMKSLVR ESLHRNMEII TKRVNAGEDS SNGLKSLVTS TSSKSLPN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19196ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0110s00370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417085.10.0PREDICTED: U-box domain-containing protein 2-like
TrEMBLA0A4D6L3N20.0A0A4D6L3N2_VIGUN; Transcription factor MYC2
STRINGXP_007153713.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.17e-32bHLH family protein