PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0110s00170.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 169aa    MW: 18625.3 Da    PI: 8.3184
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0110s00170.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.82.5e-0557961054
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      + R ++i +++  L++l+ +      +K + +++L++A+eYI  L
  Vang0110s00170.2 57 KERKEKIGERIVALQQLVSPY-----GKTDTSSVLKEAMEYIGFL 96
                      789999************999.....9***************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.1E-1046116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.6554796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-1149111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.002953102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.96E-557101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
LNTVINVCDS DDLWKREEGI DVRKMMEHKR SPCSVDQSSY TSIASKRQKA DLSISTKERK  60
EKIGERIVAL QQLVSPYGKT DTSSVLKEAM EYIGFLHKQV KLLSAPYLET SAAAKMQGME  120
ACSLRSRGLC LVPVSFTIGV AESNGADIWA PIKTTTSPKL ENDVSQFH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0110s00170.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310980.0KT031098.1 Glycine max clone HN_CCL_42 bHLH transcription factor (Glyma02g15520.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027919622.11e-119transcription factor bHLH153 isoform X4
SwissprotQ7XJU22e-57BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A0S3R2Y21e-112A0A0S3R2Y2_PHAAN; Uncharacterized protein
TrEMBLA0A1S3UWH81e-112A0A1S3UWH8_VIGRR; transcription factor bHLH153 isoform X1
STRINGXP_007156560.11e-108(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108133138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.57e-60bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]