PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0110s00170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 168aa MW: 18401.1 Da PI: 8.6246 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.8 | 2.5e-05 | 56 | 95 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R ++i +++ L++l+ + +K + +++L++A+eYI L Vang0110s00170.1 56 KERKEKIGERIVALQQLVSPY-----GKTDTSSVLKEAMEYIGFL 95 789999************999.....9***************887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 4.0E-10 | 45 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.655 | 46 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.13E-11 | 48 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0029 | 52 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.38E-5 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MIASSFCNAD SMFSREEGID VRKMMEHKRS PCSVDQSSYT SIASKRQKAD LSISTKERKE 60 KIGERIVALQ QLVSPYGKTD TSSVLKEAME YIGFLHKQVK LLSAPYLETS AAAKMQGMEA 120 CSLRSRGLCL VPVSFTIGVA ESNGADIWAP IKTTTSPKLE NDVSQFH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0110s00170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031098 | 0.0 | KT031098.1 Glycine max clone HN_CCL_42 bHLH transcription factor (Glyma02g15520.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014510438.1 | 1e-122 | transcription factor bHLH153 isoform X1 | ||||
Refseq | XP_017411985.1 | 1e-122 | PREDICTED: transcription factor bHLH113 isoform X1 | ||||
Refseq | XP_017411986.1 | 1e-122 | PREDICTED: transcription factor bHLH113 isoform X1 | ||||
Swissprot | Q7XJU2 | 4e-59 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | A0A0S3R2Y2 | 1e-121 | A0A0S3R2Y2_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A1S3UWH8 | 1e-121 | A0A1S3UWH8_VIGRR; transcription factor bHLH153 isoform X1 | ||||
STRING | GLYMA07G32980.1 | 1e-116 | (Glycine max) | ||||
STRING | XP_007156560.1 | 1e-117 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 2e-61 | bHLH family protein |
Publications ? help Back to Top | |||
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