PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0110s00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 483aa MW: 54487.3 Da PI: 9.9151 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.5 | 2.5e-32 | 340 | 395 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a+++LGGs+ AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Vang0110s00030.1 340 KQRRCWSPELHRRFVNALQKLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLH 395 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.27E-18 | 337 | 398 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.461 | 337 | 397 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-29 | 338 | 398 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-27 | 340 | 395 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.2E-8 | 342 | 393 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
LLFSNSSSFS YFLFPQNLRV LKFAYIHFPY FLFIIRNLTL FLSHSYLFLH PFPLPSPRSL 60 FLHFFFSCKQ NLNLKRKHDP MGSVLPELSL DLRPSFVPKT ITDFLRHLSS ATDRLATLHD 120 FLSRLEDELR KIHAFKRELP LSMLLLNDAI SLLKTESQKC RLRDSSPVLE EFIPLKKERD 180 RNEGNNYNDN DMDNECRDKK NWLSSVQLWN NSTTNNYASD RKHQQLHTLE NKKIEEGQSV 240 GEDPFQSCSN RNGGRRAFMP FSRYSSSSSS VPVATAGLAA ATKEEKEESV MNRLSLQTPS 300 VKEGCGSRGS RSSSSRAVSS SPPTVHPSLR ASSLQQTARK QRRCWSPELH RRFVNALQKL 360 GGSQAATPKQ IRELMQVDGL TNDEVKSHLQ KYRLHTRRVP AGSGNQPVVV LGGLWMSQDQ 420 YNDSSKVSSS GSGSPQSPLH LTTGSRGGTS PTEGDSMEDD EDARSESYSW KSHMQKPGKV 480 DV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-13 | 340 | 393 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-13 | 340 | 393 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 9e-14 | 340 | 393 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-14 | 340 | 393 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-14 | 340 | 393 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-14 | 340 | 393 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-13 | 340 | 393 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-13 | 340 | 393 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-13 | 340 | 393 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-13 | 340 | 393 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-13 | 340 | 393 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-13 | 340 | 393 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0110s00030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017418851.1 | 0.0 | PREDICTED: myb family transcription factor EFM-like | ||||
TrEMBL | A0A0L9TP83 | 0.0 | A0A0L9TP83_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R3I4 | 0.0 | A0A0S3R3I4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007156531.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1208 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 3e-54 | G2-like family protein |