PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0109s00500.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 531aa    MW: 58145.9 Da    PI: 6.5085
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0109s00500.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.12.1e-08333366238
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 
                        y+GV++++++grW A+I  +     +k  +lg+fg 
  Vang0109s00500.1 333 AYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFGK 366
                       69***************988532...5********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.28E-13173299No hitNo description
Gene3DG3DSA:3.30.730.101.2E-11174196IPR001471AP2/ERF domain
PROSITE profilePS5103214.579174297IPR001471AP2/ERF domain
SMARTSM003804.1E-19174303IPR001471AP2/ERF domain
PRINTSPR003671.1E-5175186IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-11261298IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-9264299IPR016177DNA-binding domain
PRINTSPR003671.1E-5279299IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-10332410IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-4333364IPR001471AP2/ERF domain
PROSITE profilePS5103213.301333408IPR001471AP2/ERF domain
SMARTSM003803.4E-22333414IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-6383409IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MAGATNWLTF SLTPVEMLRS PDSSSHCMLD NFYATNGWTN SKELMDSESE NQPLLVPKAE  60
DFFENQTETQ QDDSSLTQIY DHGSASVYFG DQQDLNAIPG FQAFSGTNSS SELDDSASDK  120
TTLVAPAELG AHSGESSKGA LSLCDGVAHD KAITAVELAT PKKVSHTIGQ RTSIYRGVTR  180
HRWTGRYEAH LWDNSCRREG QARKGRQGSS LSNISSFRLL NLIFHGFFIA VSLHGMWHCA  240
LHHCVARPLT VSTVYLDDKL LCLYVLLGGY DKEEKAARAY DLAAIKYWGP TATTNFPISN  300
YTKELEEMKH SGKQEFIASL RRKSSGFSRG ASAYRGVTRH HQQGRWQARI GRVAGNKDLY  360
LGTFGKFIPY LVSTLFCCIV AATEEEAAEA YDIAAIKFRG ASAVTNFEMS RYDVENILNS  420
SLPVGGVAKR LKLSSSPESE KKAIVTDEQP EGTNESSTIN FSAIQPVASI PYDSANAYPQ  480
NLFHQFHHSN SGSSSSVQES DAIVTNATAL TILPPPPAVP GFFLWPPQSF *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0109s00500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017424496.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
RefseqXP_017424570.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
RefseqXP_017424644.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A0L9TMV50.0A0A0L9TMV5_PHAAN; Uncharacterized protein
STRINGXP_007156467.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.31e-122AINTEGUMENTA-like 6