PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0109s00290.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 337aa    MW: 37868.7 Da    PI: 4.6543
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0109s00290.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.3e-12168211654
                       HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Vang0109s00290.1 168 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 211
                       589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-15164223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9168211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-15169223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.84E-5169215No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MELSQLGFLE ELVAPRRETW NALSSGFLEL LSNGWSFDTF LDNPSFPSSN TLFGAFSAPL  60
DRRFECPFTN ELPPYPFPDA FTMPLPDLQP GNDHPSPPLP PTLEDADIAF YHNNDNNFQE  120
IKTVCKVEEH GVENPQPTEI PLFNTAMSDD GERKHKSKKL EGQPSKNLMA ERRRRKRLND  180
RLSMLRSIVP KISKMDRTSI LGDTIDYMKE LLERIGKLQE EEVEEGSSQI NLLGISRDQL  240
KPNEAIVRNS PKFDVERRDQ DTRISICCAT KPGLLLSTVN TLEALGLEIQ QCVVSSFNDF  300
SVEASCSEVG EQRNSISPEE IKQSLFRNAG FGGKCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170177ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0109s00290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017411624.10.0PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL12e-83BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0S3R3330.0A0A0S3R333_PHAAN; Uncharacterized protein
STRINGXP_007156443.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-85beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]