PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0087s00500.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 229aa    MW: 26011.1 Da    PI: 6.3886
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0087s00500.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-08122162954
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r RR++i +++  L++l+P       +K++ a++L +A++Y+k L
  Vang0087s00500.1 122 ARHRREKISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 162
                       699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.964113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-14118175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-13119171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-12119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.68E-10119167No hitNo description
PfamPF000104.7E-6123162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDTNLNTTFT NVNTTYNHET MTTDQQHNII LHDHHQIPMD VGIWSNHHHP FHPQPSSSSS  60
TNFLTDVLGI QFEEDEEEEL GAMKEMMYQM AAMQPVDIDP ATVRKPKRRN VRISDDPQSV  120
AARHRREKIS EKIRILQRLV PGGTKMDTAS MLDEAIRYVK FLKRQIRFLQ STPQIHSVNA  180
TAPNSDCPFP PTTLHASTSV NLPLGIQFNA DHLQHSSGDN ENEERIQV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0087s00500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017421401.11e-170PREDICTED: transcription factor HEC3-like
TrEMBLA0A0S3REW01e-170A0A0S3REW0_PHAAN; Uncharacterized protein
STRINGXP_007137709.11e-100(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.13e-48bHLH family protein