PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0087s00440.1

Common Name

LR48_Vigan04g137700

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 204aa MW: 23504.8 Da PI: 6.3418

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0087s00440.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	28.1	5.7e-09	95	128	80	128
NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +gyWk k+t v+y+grap+g +tdWvmhey l Vang0087s00440.1 95 KGYWK---------------STGKDTKVYYRGRAPQGIRTDWVMHEYCL 128 33333...............4556677899*****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02365	9.9E-5	81	128	IPR003441	NAC domain
SuperFamily	SSF101941	3.53E-12	94	135	IPR003441	NAC domain
Gene3D	G3DSA:3.10.180.10	2.8E-7	138	188	IPR029068	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
SuperFamily	SSF54593	8.78E-6	138	190	IPR029068	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MQMPIHLIQF PIQKVHGSGQ PPPHCPPLVN TQILHFEETS KNSWASIIHI ISNHRERRAA 60 TLERQAFQQT SQDQRRRKGR EAVAHEDLTA LAHIKGYWKS TGKDTKVYYR GRAPQGIRTD 120 WVMHEYCLDD KECEDTTGLQ CESMGPVEKK LEEMEIEYAR GMVEEGRIKV DQMFFHDPDG 180 FMIEICNCDI LPVIPLPSDM VYQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0087s00440.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	1e-159	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0L9UF58	1e-149	A0A0L9UF58_PHAAN; Uncharacterized protein
STRING	Bostr.7128s0151.1.p	1e-27	(Boechera stricta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	3e-18	NAC domain containing protein 57

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]