PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0087s00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 242aa MW: 27787.1 Da PI: 5.204 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 110 | 2.7e-34 | 16 | 114 | 6 | 107 |
NAM 6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 +FhPtd+elv++yL++k++g+++ + +ikevd+yk++Pw+Lp+ +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk++ + + Vang0087s00040.1 16 EFHPTDDELVNHYLCRKCAGQPIAV-PIIKEVDLYKFDPWQLPEIGFYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGK--PK 105 7**********************99.88***************54445789************************************98..67 PP NAM 99 lvglkktLv 107 + g+kk L Vang0087s00040.1 106 ALGIKKALK 114 799999885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 33.892 | 11 | 154 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-37 | 12 | 113 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-15 | 15 | 114 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MAQRNWTEHE TRHSWEFHPT DDELVNHYLC RKCAGQPIAV PIIKEVDLYK FDPWQLPEIG 60 FYGEKEWYFF SPRDRKYPNG SRPNRAAGSG YWKATGADKP IGKPKALGIK KALKGKIEKY 120 NTGAAKSETE VVYNFEHETK PVIEKLGNEQ LFMDSSDSMQ RLQSESSGSE QVVSPDVRWE 180 REVQSHPKWN DIGLQLENAF DFQYNYFDGN NLSVDDPFGS VEYQMGHVSP LQDVLMEALL 240 M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-51 | 14 | 113 | 18 | 118 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0087s00040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017422188.1 | 1e-158 | PREDICTED: NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 1e-67 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A0S3RFL2 | 1e-158 | A0A0S3RFL2_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A385GMT0 | 1e-158 | A0A385GMT0_VIGUM; NAR1 | ||||
STRING | XP_007137752.1 | 1e-139 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF28608 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 6e-49 | NAC family protein |