PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang0087s00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 287aa MW: 32616.3 Da PI: 6.6106 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 121.5 | 7.3e-38 | 56 | 159 | 1 | 107 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtd+elv++yL++k++g+++ + +ikevd+yk++Pw+Lp+ +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk++ Vang0087s00030.1 56 LPPGFRFHPTDDELVNHYLCRKCAGQPIAA-PIIKEVDLYKFDPWQLPEIGFYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIG 147 79*************************999.88***************54445789************************************9 PP NAM 94 skkgelvglkktLv 107 + ++ g+kk L Vang0087s00030.1 148 K--PKALGIKKALK 159 8..67799999885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-42 | 50 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 38.969 | 56 | 199 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-18 | 57 | 159 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 287 aa Download sequence Send to blast |
LPHVSSHIAK QSQQHSPTKS TTTAATQEAR KSEDRSVNET THKREDKKRM KGELELPPGF 60 RFHPTDDELV NHYLCRKCAG QPIAAPIIKE VDLYKFDPWQ LPEIGFYGEK EWYFFSPRDR 120 KYPNGSRPNR AAGSGYWKAT GADKPIGKPK ALGIKKALKG KIEKYNTGAA KSETEVVYNF 180 EHETKPVIEK LGNEQLFMDS SDXMQRLQSE SSGSEQVVSP DVRWEREVQS HPKWNDIGLQ 240 LENAFDFQYN YFDGNNLSVD DPFGSVEYQM GHVSPLQDLL MEALLM* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-56 | 51 | 158 | 10 | 118 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang0087s00030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017420546.1 | 1e-169 | PREDICTED: NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 8e-73 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A0L9UEU2 | 1e-168 | A0A0L9UEU2_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RFK0 | 1e-168 | A0A0S3RFK0_PHAAN; Uncharacterized protein | ||||
STRING | XP_007137752.1 | 1e-148 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF28608 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-54 | NAC family protein |