PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0076s00200.1
Common NameLR48_Vigan08g102500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 281aa    MW: 31940 Da    PI: 8.7545
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0076s00200.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.53.2e-33441841128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...... 79 
                       lp+G++F+Ptd+e++ e+L++kv+++ ++l+        +++   +i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+++      
  Vang0076s00200.1  44 LPAGVKFDPTDQEIL-EHLEAKVRSDIHKLHPlidefipTLEGEnGICYTHPEKLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKVHsdedgs 134
                       799***********9.99*****99984443333333222333336**********.555555677******************855455555 PP

               NAM  80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       + +W++tgk+++v++ + +l+g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Vang0076s00200.1 135 ETRWHKTGKTRPVYN-SAKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 184
                       778************.999***********6657999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-3739203IPR003441NAC domain
PROSITE profilePS5100532.93844203IPR003441NAC domain
PfamPF023651.1E-1545184IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MTQCSDPNII VEGRKDSLIR TCPTCGHHIK CQEQGGGIHD LPGLPAGVKF DPTDQEILEH  60
LEAKVRSDIH KLHPLIDEFI PTLEGENGIC YTHPEKLPGV SKDGLIRHFF HRPSKAYTTG  120
TRKRRKVHSD EDGSETRWHK TGKTRPVYNS AKLKGYKKIL VLYTNYGKQR KPEKTNWVMH  180
QYHLGSDEEE KEGELVVSKV FYQTQPRQCS SLMKDSSVPE KNMKGQSVHE VINSRNKNNG  240
FVEYYHSNFI SFDQSAQHRP TTAQVISHFP VHEGASFNIP *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0076s00200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017432664.10.0PREDICTED: NAC domain-containing protein 73-like
SwissprotO494591e-115NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0L9V5F40.0A0A0L9V5F4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SBA00.0A0A0S3SBA0_PHAAN; Uncharacterized protein
STRINGXP_007132767.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-117NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]
  4. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]