PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0076s00200.1 | ||||||||
Common Name | LR48_Vigan08g102500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 281aa MW: 31940 Da PI: 8.7545 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.5 | 3.2e-33 | 44 | 184 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...... 79 lp+G++F+Ptd+e++ e+L++kv+++ ++l+ +++ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ Vang0076s00200.1 44 LPAGVKFDPTDQEIL-EHLEAKVRSDIHKLHPlidefipTLEGEnGICYTHPEKLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKVHsdedgs 134 799***********9.99*****99984443333333222333336**********.555555677******************855455555 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ + +l+g kk+Lv+y g+++k+ekt+Wvmh+y+l Vang0076s00200.1 135 ETRWHKTGKTRPVYN-SAKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 184 778************.999***********6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-37 | 39 | 203 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.938 | 44 | 203 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-15 | 45 | 184 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MTQCSDPNII VEGRKDSLIR TCPTCGHHIK CQEQGGGIHD LPGLPAGVKF DPTDQEILEH 60 LEAKVRSDIH KLHPLIDEFI PTLEGENGIC YTHPEKLPGV SKDGLIRHFF HRPSKAYTTG 120 TRKRRKVHSD EDGSETRWHK TGKTRPVYNS AKLKGYKKIL VLYTNYGKQR KPEKTNWVMH 180 QYHLGSDEEE KEGELVVSKV FYQTQPRQCS SLMKDSSVPE KNMKGQSVHE VINSRNKNNG 240 FVEYYHSNFI SFDQSAQHRP TTAQVISHFP VHEGASFNIP * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0076s00200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017432664.1 | 0.0 | PREDICTED: NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 1e-115 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A0L9V5F4 | 0.0 | A0A0L9V5F4_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SBA0 | 0.0 | A0A0S3SBA0_PHAAN; Uncharacterized protein | ||||
STRING | XP_007132767.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1228 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-117 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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