PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang0076s00140.2 | ||||||||
Common Name | LR48_Vigan08g103100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 332aa MW: 36277.9 Da PI: 6.4516 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.6 | 1.2e-27 | 166 | 220 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G +kA+P++ile+m++++Lt+++++SHLQkYR++ Vang0076s00140.2 166 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILEIMGINCLTRHNIASHLQKYRSH 220 5689*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.77 | 163 | 222 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-26 | 164 | 223 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.02E-18 | 164 | 223 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-26 | 166 | 220 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.0E-8 | 169 | 218 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 332 aa Download sequence Send to blast |
LELMLAVAPL RSIKDEKNQR EMEGFSMAAK SASDDDDFRE LSEGNLLESI NFDDLFVGID 60 VGGDVLPDLE MFGEFSVSAG EESSEMNSSA ENSKEENDRN CVLTVSKKEV EEDKSSCAAS 120 GQEIVSKNGE SVVVNPAPKE GGKGRKSSSA QLKNNSNSNH PQGKRKVKVD WTPELHRRFV 180 QAVEQLGVDK AVPSRILEIM GINCLTRHNI ASHLQKYRSH RKHLLAREAE AASWSQRRHI 240 YGVGKREGFG THHVPGIPPH AMYKADHSIG IHGPRPLLDF HPSKECIDAA IGDVLSKPWL 300 PLPLGLKAPA IDSVMSELQR QGIPNIPPSS A* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 6e-15 | 171 | 222 | 6 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang0076s00140.2 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017433608.1 | 1e-172 | PREDICTED: transcription activator GLK1-like isoform X1 | ||||
Swissprot | Q9SIV3 | 8e-58 | GLK1_ARATH; Transcription activator GLK1 | ||||
TrEMBL | A0A0L9V687 | 1e-171 | A0A0L9V687_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SBB9 | 1e-171 | A0A0S3SBB9_PHAAN; Uncharacterized protein | ||||
STRING | XP_007132777.1 | 1e-145 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G20570.1 | 3e-56 | GBF's pro-rich region-interacting factor 1 |