PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0076s00050.1 | ||||||||
Common Name | LR48_Vigan08g104200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 115aa MW: 13050 Da PI: 10.1928 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 25.5 | 3.2e-08 | 22 | 43 | 2 | 24 |
AP2 2 gykGVrwdkkrgrWvAeIrdpse 24 +y+GVr ++ +gr++AeIrdp + Vang0076s00050.1 22 HYRGVRKRP-WGRYAAEIRDPGK 43 7********.**********832 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 0.0077 | 22 | 82 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-10 | 22 | 47 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 10.086 | 22 | 47 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-5 | 22 | 47 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MVAKDKTVIK NKKPNNAADE VHYRGVRKRP WGRYAAEIRD PGKKSRIQQQ LLVAPVAPVR 60 PVFLLDRAHY LTHQFPFRFE PAPVQSDSDS SSVVDCQPKR ELNLDLNLAP PMDY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0076s00050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 1e-112 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017432301.1 | 9e-32 | PREDICTED: ethylene-responsive transcription factor 9-like | ||||
TrEMBL | A0A0L9V546 | 2e-30 | A0A0L9V546_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SBC4 | 2e-30 | A0A0S3SBC4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007132794.1 | 8e-27 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40685 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15210.1 | 8e-14 | ethylene responsive element binding factor 4 |
Publications ? help Back to Top | |||
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