PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0071ss00650.1 | ||||||||
Common Name | LR48_Vigan11g009500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GRAS | ||||||||
Protein Properties | Length: 540aa MW: 59530.6 Da PI: 5.7553 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 248.6 | 2.5e-76 | 153 | 527 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 ++lL cA a++ g+l+++q+lL l+elasp+gd+++Rlaa+ ++AL ++l++s +++ + +++ + + l f+evsP++ f Vang0071ss00650.1 153 EQLLNPCAAAITGGNLTRVQHLLYVLHELASPTGDANHRLAAHGLKALTHHLSSSLVSTSTGYMTFAST--EPRFFQKTLLKFYEVSPWFSF 242 689***************************************************666666555555554..23333334444********** PP GRAS 94 shltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg......skeeleetgerLakfAeelgv 174 + +aN Il+ + ++ +++Hi+D+++s+G+QWp++l+aL+ Rp ++pp +R+T+v +++++ + +rL fA+ ++v Vang0071ss00650.1 243 PNNIANASILQVLGEDndnsRTLHILDIGASHGMQWPTFLEALSRRPgGPPPLVRLTVVTASSTEidtpfsIGPPGDNFSSRLLGFAQLMNV 334 ***********997766666899************************55566*********8888998888788899*************** PP GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflealey 263 +++++ l l++l+ ++ +++p+E +V+ +++lh+l ++s++ +s e+Lk++++++Pk v+++++++++ + ++F+ +f++ +ey Vang0071ss00650.1 335 NLQIKRLDNCPLQTLSAQSVDTSPDEIFVVCAQFRLHQLSHNSTDEKS---EFLKVLRNMEPKGVILSDNNMECccsGCGDFAMGFSRRVEY 423 ******8777*****************************977777777...********************887644566************ PP GRAS 264 ysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrvee 353 ++++ds+ +a +r+s+er+++E e+ ++++++ ++ +e +ekW er++eaGF l+e+a + ++llrk++ +++++ve+ Vang0071ss00650.1 424 LWKFLDSTsSAFKGRDSDERRVMEG-----EAAKALTNQREM----NEGKEKWCERMKEAGFVGEVLGEDAIDGGRALLRKYDtNWEMKVED 506 ********44444555566666555.....577777777666....99***********************************9999***** PP GRAS 354 esgslvlgWkdrpLvsvSaWr 374 ++ s+ l Wk++p+ +++ W+ Vang0071ss00650.1 507 DNRSVGLWWKGQPVSFCTLWK 527 ********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 38.875 | 126 | 506 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.6E-74 | 153 | 527 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042446 | Biological Process | hormone biosynthetic process | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence Send to blast |
MIMEPNPTSD HSLDWFEGSV SFFPLPPFLD DPYNCSDIQL WDQDISSHYQ TDANTSSPNA 60 TNIATTTTPP EPCASNNLPL SDLPKKRSAT DDSSLGQPQN HKHKKIKSKP LNNEADSGDA 120 EGTTTVRKPG GNKKGAAKGV ANNCNNKEGR WAEQLLNPCA AAITGGNLTR VQHLLYVLHE 180 LASPTGDANH RLAAHGLKAL THHLSSSLVS TSTGYMTFAS TEPRFFQKTL LKFYEVSPWF 240 SFPNNIANAS ILQVLGEDND NSRTLHILDI GASHGMQWPT FLEALSRRPG GPPPLVRLTV 300 VTASSTEIDT PFSIGPPGDN FSSRLLGFAQ LMNVNLQIKR LDNCPLQTLS AQSVDTSPDE 360 IFVVCAQFRL HQLSHNSTDE KSEFLKVLRN MEPKGVILSD NNMECCCSGC GDFAMGFSRR 420 VEYLWKFLDS TSSAFKGRDS DERRVMEGEA AKALTNQREM NEGKEKWCER MKEAGFVGEV 480 LGEDAIDGGR ALLRKYDTNW EMKVEDDNRS VGLWWKGQPV SFCTLWKLDG NDQSSTFTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 2e-41 | 149 | 527 | 84 | 473 | Protein SHORT-ROOT |
5b3h_B | 1e-41 | 149 | 527 | 30 | 419 | Protein SHORT-ROOT |
5b3h_E | 1e-41 | 149 | 527 | 30 | 419 | Protein SHORT-ROOT |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0071ss00650.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014516188.1 | 0.0 | scarecrow-like protein 29 | ||||
Swissprot | Q4VYC8 | 0.0 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A0L9VQ41 | 0.0 | A0A0L9VQ41_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SZV3 | 0.0 | A0A0S3SZV3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007135437.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6874 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-148 | GRAS family protein |
Publications ? help Back to Top | |||
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